Variant report

Variant	rs57334298
Chromosome Location	chr7:20820972-20820973
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:20819516..20822047-chr7:20825744..20828031,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164651	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10250167	1.00[EUR][1000 genomes]
rs73276841	1.00[EUR][1000 genomes]
rs7789213	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030726	chr7:20506095-21086719	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529725	chr7:20773076-20993701	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv824024	chr7:20809566-20844134	Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:20817600-20824200	Bivalent/Poised TSS	Brain Germinal Matrix	brain
2	chr7:20818200-20823200	Weak transcription	Gastric	stomach
3	chr7:20818200-20823400	Weak transcription	Pancreas	Pancrea
4	chr7:20819000-20821000	Genic enhancers	Cortex derived primary cultured neurospheres	brain
5	chr7:20819000-20821400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr7:20819000-20822200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:20819200-20821400	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr7:20819400-20821200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
9	chr7:20819800-20821000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
10	chr7:20820200-20821000	Active TSS	Fetal Brain Female	brain
11	chr7:20820200-20821400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr7:20820200-20822000	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr7:20820200-20822600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr7:20820400-20821400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr7:20820600-20821400	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr7:20820600-20821400	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr7:20820600-20822400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr7:20820600-20823000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr7:20820800-20821200	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr7:20820800-20821400	Enhancers	HUES48 Cell Line	embryonic stem cell

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