Variant report

Variant	rs73276841
Chromosome Location	chr7:20898635-20898636
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10244220	1.00[EUR][1000 genomes]
rs10250167	1.00[EUR][1000 genomes]
rs13236745	1.00[EUR][1000 genomes]
rs2192054	1.00[EUR][1000 genomes]
rs2215682	1.00[EUR][1000 genomes]
rs57334298	1.00[EUR][1000 genomes]
rs6461531	1.00[EUR][1000 genomes]
rs6461533	1.00[EUR][1000 genomes]
rs7789213	1.00[EUR][1000 genomes]
rs7802038	1.00[EUR][1000 genomes]
rs7804011	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030726	chr7:20506095-21086719	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529725	chr7:20773076-20993701	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv887838	chr7:20862302-21016683	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:20898400-20899200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr7:20898400-20899200	Enhancers	Adipose Nuclei	Adipose
3	chr7:20898400-20899400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr7:20898400-20899400	Enhancers	Liver	Liver
5	chr7:20898600-20898800	Enhancers	Pancreas	Pancrea
6	chr7:20898600-20899000	Enhancers	Fetal Lung	lung
7	chr7:20898600-20899200	Enhancers	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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