Variant report

Variant	rs57336143
Chromosome Location	chr20:11257519-11257520
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11698237	1.00[AMR][1000 genomes]
rs13433255	1.00[AMR][1000 genomes]
rs2207115	1.00[AMR][1000 genomes]
rs58524115	1.00[AMR][1000 genomes]
rs58755628	1.00[AMR][1000 genomes]
rs60852377	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6104756	1.00[AMR][1000 genomes]
rs6108971	1.00[AMR][1000 genomes]
rs6108972	1.00[AMR][1000 genomes]
rs6108973	1.00[AMR][1000 genomes]
rs6108984	1.00[AMR][1000 genomes]
rs6108987	1.00[AMR][1000 genomes]
rs6108991	1.00[AMR][1000 genomes]
rs61136676	1.00[AMR][1000 genomes]
rs7267502	1.00[AMR][1000 genomes]
rs73259525	1.00[AMR][1000 genomes]
rs73896349	1.00[AMR][1000 genomes]
rs73896362	1.00[AMR][1000 genomes]
rs73896367	1.00[AMR][1000 genomes]
rs73896368	1.00[AMR][1000 genomes]
rs73896370	1.00[AMR][1000 genomes]
rs73896387	1.00[AMR][1000 genomes]
rs73896399	1.00[AMR][1000 genomes]
rs73896400	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv585415	chr20:11134907-11383327	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv3292	chr20:11233247-11267986	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11254400-11261800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr20:11257200-11257800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr20:11257400-11257600	Enhancers	H1 Cell Line	embryonic stem cell
4	chr20:11257400-11257800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr20:11257400-11258000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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