Variant report

Variant	rs58524115
Chromosome Location	chr20:11438903-11438904
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11698237	1.00[AMR][1000 genomes]
rs13433255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2207115	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57336143	1.00[AMR][1000 genomes]
rs58755628	1.00[AMR][1000 genomes]
rs60417076	0.95[AFR][1000 genomes]
rs60852377	1.00[AMR][1000 genomes]
rs6104756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6104758	1.00[AFR][1000 genomes]
rs6104762	0.95[AFR][1000 genomes]
rs6108971	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6108972	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6108973	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6108984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6108987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6108991	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6109007	1.00[AFR][1000 genomes]
rs6109008	0.95[AFR][1000 genomes]
rs6109016	0.95[AFR][1000 genomes]
rs6109017	0.95[AFR][1000 genomes]
rs6109018	0.95[AFR][1000 genomes]
rs6109019	0.95[AFR][1000 genomes]
rs61136676	1.00[AMR][1000 genomes]
rs7267502	1.00[AMR][1000 genomes]
rs73259525	1.00[AMR][1000 genomes]
rs73896349	1.00[AMR][1000 genomes]
rs73896362	1.00[AMR][1000 genomes]
rs73896367	1.00[AMR][1000 genomes]
rs73896368	1.00[AMR][1000 genomes]
rs73896370	1.00[AMR][1000 genomes]
rs73896387	1.00[AMR][1000 genomes]
rs73896399	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73896400	1.00[AMR][1000 genomes]
rs73899009	1.00[AMR][1000 genomes]
rs977277	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv432099	chr20:11371093-11476900	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1058734	chr20:11389232-11479953	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv522929	chr20:11411026-11516418	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11433800-11440000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr20:11434400-11440200	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr20:11436200-11439000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr20:11436200-11439600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr20:11436200-11439600	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr20:11436200-11440200	Weak transcription	Rectal Smooth Muscle	rectum
7	chr20:11436200-11441200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr20:11436400-11439400	Enhancers	HMEC	breast
9	chr20:11436600-11448400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr20:11436800-11440000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr20:11436800-11440000	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr20:11436800-11440000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr20:11437000-11439200	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr20:11437000-11439400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr20:11437000-11439400	Weak transcription	Colon Smooth Muscle	Colon
16	chr20:11437000-11439600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr20:11437000-11439800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr20:11437000-11439800	Weak transcription	HSMMtube	muscle
19	chr20:11437200-11439200	Weak transcription	Fetal Intestine Large	intestine
20	chr20:11437200-11439200	Weak transcription	Fetal Intestine Small	intestine
21	chr20:11437200-11439600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr20:11437200-11440000	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr20:11437400-11440200	Weak transcription	HUVEC	blood vessel
24	chr20:11437800-11439200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr20:11437800-11441200	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr20:11437800-11441400	Enhancers	Monocytes-CD14+_RO01746	blood
27	chr20:11438000-11439000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr20:11438200-11439000	Enhancers	Primary hematopoietic stem cells	blood
29	chr20:11438400-11440600	Enhancers	A549	lung
30	chr20:11438400-11440800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr20:11438600-11439800	Weak transcription	NHEK	skin
32	chr20:11438600-11440000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr20:11438800-11439800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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