Variant report

Variant	rs977277
Chromosome Location	chr20:11475808-11475809
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs13433255	1.00[AFR][1000 genomes]
rs2207115	0.81[AFR][1000 genomes]
rs58524115	1.00[AFR][1000 genomes]
rs60417076	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6104756	1.00[AFR][1000 genomes]
rs6104758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6104762	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6108971	0.81[AFR][1000 genomes]
rs6108972	0.81[AFR][1000 genomes]
rs6108973	0.93[AFR][1000 genomes]
rs6108984	1.00[AFR][1000 genomes]
rs6108987	1.00[AFR][1000 genomes]
rs6108991	1.00[AFR][1000 genomes]
rs6109007	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6109008	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6109016	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6109017	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6109018	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6109019	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73896399	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432099	chr20:11371093-11476900	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1058734	chr20:11389232-11479953	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv522929	chr20:11411026-11516418	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3396140	chr20:11474702-11476750	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11472400-11478200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr20:11472400-11479600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr20:11473800-11476600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr20:11474000-11479400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr20:11474000-11479600	Weak transcription	HMEC	breast
6	chr20:11474000-11479600	Weak transcription	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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