Variant report

Variant	rs6109019
Chromosome Location	chr20:11497885-11497886
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs13433255	0.95[AFR][1000 genomes]
rs57346595	0.82[AFR][1000 genomes]
rs58524115	0.95[AFR][1000 genomes]
rs60417076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6104756	0.95[AFR][1000 genomes]
rs6104758	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6104762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6108973	0.89[AFR][1000 genomes]
rs6108984	0.95[AFR][1000 genomes]
rs6108987	0.95[AFR][1000 genomes]
rs6108991	0.95[AFR][1000 genomes]
rs6109007	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6109008	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6109016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6109017	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6109018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73896399	0.95[AFR][1000 genomes]
rs977277	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522929	chr20:11411026-11516418	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11490800-11510400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr20:11493000-11498400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr20:11496400-11499000	Enhancers	Stomach Mucosa	stomach
4	chr20:11496600-11498000	Enhancers	Fetal Intestine Small	intestine
5	chr20:11496800-11498000	Enhancers	Duodenum Mucosa	Duodenum
6	chr20:11497200-11498000	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr20:11497800-11504800	Weak transcription	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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