Variant report

Variant	rs57347315
Chromosome Location	chr8:119858402-119858403
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2201347	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891414	chr8:119755490-119881550	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv831444	chr8:119757355-119915966	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv470234	chr8:119856209-119906530	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119856600-119861200	Weak transcription	HSMMtube	muscle
2	chr8:119856600-119862200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr8:119856600-119862400	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr8:119856800-119858600	Weak transcription	Osteobl	bone
5	chr8:119856800-119861800	Weak transcription	NHEK	skin
6	chr8:119856800-119862000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr8:119856800-119862200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr8:119857000-119861800	Weak transcription	HMEC	breast
9	chr8:119857000-119862000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr8:119857600-119859000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr8:119858200-119858600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr8:119858200-119862000	Enhancers	Hela-S3	cervix
13	chr8:119858400-119858600	ZNF genes & repeats	HSMM	muscle
14	chr8:119858400-119858800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr8:119858400-119859000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr8:119858400-119859000	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr8:119858400-119859000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr8:119858400-119859200	Enhancers	NHDF-Ad	bronchial

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links