Variant report

Variant	rs2201347
Chromosome Location	chr8:119875207-119875208
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:119862765..119865720-chr8:119873714..119876023,2	MCF-7	breast:
2	chr8:119873937..119876424-chr8:119878848..119881017,4	MCF-7	breast:
3	chr8:119873726..119875943-chr8:119888839..119890975,3	MCF-7	breast:
4	chr8:119872555..119876115-chr8:119889180..119893027,6	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11573939	1.00[ASN][1000 genomes]
rs11997898	1.00[ASN][1000 genomes]
rs16891598	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16891617	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1872425	1.00[ASN][1000 genomes]
rs55839253	1.00[ASN][1000 genomes]
rs57347315	0.86[AFR][1000 genomes]
rs60431355	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6651219	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6651220	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73315533	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73315551	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7829526	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891414	chr8:119755490-119881550	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv831444	chr8:119757355-119915966	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv470234	chr8:119856209-119906530	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv517081	chr8:119872439-119886889	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119873400-119877600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:119873400-119877600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr8:119873800-119877600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr8:119874000-119875400	Enhancers	GM12878-XiMat	blood
5	chr8:119874000-119876200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr8:119874000-119876400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr8:119874000-119877600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr8:119874000-119878000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr8:119874000-119878200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr8:119874000-119878200	Weak transcription	Brain Germinal Matrix	brain
11	chr8:119874200-119876000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr8:119874200-119876200	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr8:119874400-119877600	Weak transcription	Fetal Kidney	kidney
14	chr8:119874400-119878000	Weak transcription	Fetal Lung	lung
15	chr8:119874400-119878000	Weak transcription	Stomach Mucosa	stomach
16	chr8:119874400-119880400	Weak transcription	Aorta	Aorta
17	chr8:119874800-119876000	Enhancers	Liver	Liver
18	chr8:119875000-119875600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr8:119875000-119876200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr8:119875200-119877400	Weak transcription	Fetal Intestine Large	intestine
21	chr8:119875200-119878000	Weak transcription	Fetal Intestine Small	intestine
22	chr8:119875200-119880200	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr8:119875200-119880400	Weak transcription	Rectal Mucosa Donor 31	rectum

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