Variant report

Variant	rs16891598
Chromosome Location	chr8:119873213-119873214
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11573939	1.00[ASN][1000 genomes]
rs11997898	1.00[ASN][1000 genomes]
rs16891617	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1872425	1.00[ASN][1000 genomes]
rs2201347	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55839253	1.00[ASN][1000 genomes]
rs60431355	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6651219	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6651220	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73313885	0.91[AFR][1000 genomes]
rs73313901	0.94[AFR][1000 genomes]
rs73315533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73315551	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7829526	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs923874	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891414	chr8:119755490-119881550	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv831444	chr8:119757355-119915966	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv470234	chr8:119856209-119906530	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv517081	chr8:119872439-119886889	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119870200-119873400	Weak transcription	Fetal Intestine Small	intestine
2	chr8:119872800-119873400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr8:119872800-119874200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr8:119872800-119874400	Enhancers	Fetal Lung	lung
5	chr8:119872800-119875200	Enhancers	Fetal Intestine Large	intestine
6	chr8:119873000-119873400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr8:119873000-119873800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr8:119873000-119874000	Weak transcription	GM12878-XiMat	blood
9	chr8:119873200-119873400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr8:119873200-119874000	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr8:119873200-119874000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr8:119873200-119874000	Enhancers	Brain Germinal Matrix	brain
13	chr8:119873200-119874400	Enhancers	Fetal Kidney	kidney
14	chr8:119873200-119875000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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