Variant report

Variant	rs11997898
Chromosome Location	chr8:119973830-119973831
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:119968538..119970397-chr8:119971992..119974738,2	MCF-7	breast:
2	chr8:119968808..119970623-chr8:119972965..119975442,2	MCF-7	breast:
3	chr8:119953257..119955097-chr8:119973674..119975994,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11573939	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11984630	0.80[CEU][hapmap]
rs11993915	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13254750	1.00[JPT][hapmap]
rs16891598	1.00[ASN][1000 genomes]
rs16891617	1.00[ASN][1000 genomes]
rs16891963	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17179200	1.00[JPT][hapmap]
rs17179583	1.00[JPT][hapmap]
rs1872425	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2201347	1.00[ASN][1000 genomes]
rs4460404	1.00[JPT][hapmap]
rs4537331	1.00[JPT][hapmap]
rs55781186	1.00[ASN][1000 genomes]
rs6651219	1.00[ASN][1000 genomes]
rs6651220	1.00[ASN][1000 genomes]
rs7017788	1.00[ASN][1000 genomes]
rs72682416	1.00[ASN][1000 genomes]
rs72682419	1.00[ASN][1000 genomes]
rs72682426	1.00[ASN][1000 genomes]
rs72682427	1.00[ASN][1000 genomes]
rs72682428	1.00[ASN][1000 genomes]
rs72682430	1.00[ASN][1000 genomes]
rs72682431	1.00[ASN][1000 genomes]
rs72682433	1.00[ASN][1000 genomes]
rs72682444	1.00[ASN][1000 genomes]
rs73315533	1.00[ASN][1000 genomes]
rs73315551	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868916	chr8:119911943-120762250	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv2758169	chr8:119943309-120275750	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	esv2759639	chr8:119943309-120275750	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11997898	RAD21	cis	cerebellum	SCAN

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119967600-119975400	Enhancers	Hela-S3	cervix
2	chr8:119972400-119974200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr8:119973000-119975000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:119973400-119974400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr8:119973400-119974800	Enhancers	NHDF-Ad	bronchial
6	chr8:119973400-119974800	Enhancers	Osteobl	bone
7	chr8:119973600-119974000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr8:119973600-119974200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr8:119973600-119974400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr8:119973600-119974600	Enhancers	Muscle Satellite Cultured Cells	--
11	chr8:119973600-119974600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr8:119973600-119974600	Enhancers	Adipose Nuclei	Adipose
13	chr8:119973600-119974800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr8:119973600-119974800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr8:119973600-119974800	Enhancers	NH-A	brain
16	chr8:119973800-119974000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr8:119973800-119974400	Enhancers	Pancreas	Pancrea
18	chr8:119973800-119974400	Enhancers	Right Atrium	heart
19	chr8:119973800-119974600	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr8:119973800-119974600	Enhancers	HSMMtube	muscle
21	chr8:119973800-119974800	Enhancers	NHLF	lung
22	chr8:119973800-119975600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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