Variant report

Variant	rs73315551
Chromosome Location	chr8:119878087-119878088
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11573939	1.00[ASN][1000 genomes]
rs11997898	1.00[ASN][1000 genomes]
rs16891598	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16891617	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1872425	1.00[ASN][1000 genomes]
rs2201347	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55839253	1.00[ASN][1000 genomes]
rs60431355	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6651219	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6651220	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73313885	0.85[AFR][1000 genomes]
rs73313901	0.88[AFR][1000 genomes]
rs73315533	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7829526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs923874	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891414	chr8:119755490-119881550	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv831444	chr8:119757355-119915966	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv470234	chr8:119856209-119906530	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv517081	chr8:119872439-119886889	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119874000-119878200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr8:119874000-119878200	Weak transcription	Brain Germinal Matrix	brain
3	chr8:119874400-119880400	Weak transcription	Aorta	Aorta
4	chr8:119875200-119880200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr8:119875200-119880400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr8:119876000-119879200	Weak transcription	Liver	Liver
7	chr8:119876200-119878200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr8:119876200-119878800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr8:119876200-119879400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr8:119876200-119880000	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr8:119876400-119880800	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr8:119876800-119879400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr8:119877000-119878200	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr8:119877400-119883400	Enhancers	Fetal Intestine Large	intestine
15	chr8:119877600-119879000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
16	chr8:119877600-119879200	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr8:119877600-119879200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
18	chr8:119877600-119879400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr8:119877600-119880400	Enhancers	Fetal Kidney	kidney
20	chr8:119877600-119880600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr8:119877600-119881400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr8:119877600-119883600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr8:119877800-119878800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr8:119878000-119878200	Enhancers	Stomach Mucosa	stomach
25	chr8:119878000-119878400	Enhancers	Fetal Brain Female	brain
26	chr8:119878000-119878400	Enhancers	Fetal Heart	heart
27	chr8:119878000-119878400	Enhancers	Gastric	stomach
28	chr8:119878000-119878800	Enhancers	GM12878-XiMat	blood
29	chr8:119878000-119879000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr8:119878000-119879000	Enhancers	Pancreas	Pancrea
31	chr8:119878000-119879200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr8:119878000-119879200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr8:119878000-119879200	Enhancers	Left Ventricle	heart
34	chr8:119878000-119879600	Enhancers	H1 Cell Line	embryonic stem cell
35	chr8:119878000-119879600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr8:119878000-119879600	Enhancers	Cortex derived primary cultured neurospheres	brain
37	chr8:119878000-119880400	Enhancers	Fetal Lung	lung
38	chr8:119878000-119883200	Enhancers	Fetal Intestine Small	intestine

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