Variant report

Variant	rs73313885
Chromosome Location	chr8:119858701-119858702
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16891598	0.91[AFR][1000 genomes]
rs60431355	0.82[AFR][1000 genomes]
rs6651219	0.91[AFR][1000 genomes]
rs6651220	0.91[AFR][1000 genomes]
rs73313901	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73315533	0.91[AFR][1000 genomes]
rs73315551	0.85[AFR][1000 genomes]
rs7829526	0.85[AFR][1000 genomes]
rs923874	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891414	chr8:119755490-119881550	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv831444	chr8:119757355-119915966	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv470234	chr8:119856209-119906530	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119856600-119861200	Weak transcription	HSMMtube	muscle
2	chr8:119856600-119862200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr8:119856600-119862400	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr8:119856800-119861800	Weak transcription	NHEK	skin
5	chr8:119856800-119862000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr8:119856800-119862200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr8:119857000-119861800	Weak transcription	HMEC	breast
8	chr8:119857000-119862000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr8:119857600-119859000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr8:119858200-119862000	Enhancers	Hela-S3	cervix
11	chr8:119858400-119858800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr8:119858400-119859000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr8:119858400-119859000	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr8:119858400-119859000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr8:119858400-119859200	Enhancers	NHDF-Ad	bronchial
16	chr8:119858600-119858800	Enhancers	NH-A	brain
17	chr8:119858600-119859000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr8:119858600-119859000	Enhancers	HSMM	muscle
19	chr8:119858600-119859000	Enhancers	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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