Variant report

Variant	rs573552336
Chromosome Location	chr6:166977816-166977817
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:166974194..166976909-chr6:166977553..166980494,3	K562	blood:
2	chr6:166975267..166978295-chr6:166978843..166980508,3	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886941	chr6:166907173-166996991	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv5592	chr6:166958317-167002951	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1029530	chr6:166977678-167016052	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166966200-166978000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:166968400-166985800	Weak transcription	Fetal Kidney	kidney
3	chr6:166969400-166978800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:166970800-166979800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr6:166970800-166986200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:166971000-166986000	Weak transcription	Pancreas	Pancrea
7	chr6:166971400-166980200	Weak transcription	Brain Anterior Caudate	brain
8	chr6:166972200-166979600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:166972200-166986000	Weak transcription	Gastric	stomach
10	chr6:166972400-166979200	Weak transcription	NHEK	skin
11	chr6:166973000-166979200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:166973400-166984600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:166973600-166978000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:166973800-166979000	Weak transcription	HMEC	breast
15	chr6:166973800-166979200	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr6:166973800-166986000	Weak transcription	Fetal Intestine Small	intestine
17	chr6:166974000-166978400	Weak transcription	Stomach Smooth Muscle	stomach
18	chr6:166974000-166979400	Weak transcription	Brain Substantia Nigra	brain
19	chr6:166974000-166989600	Weak transcription	Primary T cells from cord blood	blood
20	chr6:166974200-166981600	Enhancers	Fetal Muscle Leg	muscle
21	chr6:166974400-166978400	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr6:166974400-166992400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr6:166974600-166978000	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr6:166974600-166979000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr6:166974600-166979400	Genic enhancers	Fetal Stomach	stomach
26	chr6:166974600-166981000	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr6:166974800-166986000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr6:166975000-166979200	Weak transcription	Brain Angular Gyrus	brain
29	chr6:166975600-166979400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr6:166975600-166981600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr6:166975800-166979000	Weak transcription	Brain Cingulate Gyrus	brain
32	chr6:166975800-166979600	Weak transcription	HSMM	muscle
33	chr6:166975800-166980000	Weak transcription	Osteobl	bone
34	chr6:166976000-166978000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr6:166976000-166978200	Weak transcription	Rectal Smooth Muscle	rectum
36	chr6:166976000-166979000	Weak transcription	HSMMtube	muscle
37	chr6:166976200-166978000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr6:166976200-166978800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr6:166976200-166981600	Enhancers	Fetal Muscle Trunk	muscle
40	chr6:166976400-166978200	Weak transcription	NHLF	lung
41	chr6:166976400-166978400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr6:166976400-166979600	Weak transcription	NHDF-Ad	bronchial
43	chr6:166976400-166988600	Weak transcription	Ovary	ovary
44	chr6:166976600-166978200	Enhancers	H1 Cell Line	embryonic stem cell
45	chr6:166976600-166978400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr6:166976600-166979000	Weak transcription	Right Atrium	heart
47	chr6:166976600-166979600	Weak transcription	Right Ventricle	heart
48	chr6:166976800-166978800	Weak transcription	Psoas Muscle	Psoas
49	chr6:166976800-166979800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr6:166977000-166978600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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