Variant report

Variant	rs573653676
Chromosome Location	chr12:40280808-40280809
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899025	chr12:40191778-40321846	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv1049214	chr12:40197549-40326495	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv1046428	chr12:40226283-40439843	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv541481	chr12:40226283-40439843	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv899026	chr12:40279428-40302581	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv558593	chr12:40279428-40317017	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40273000-40286000	Weak transcription	Pancreas	Pancrea
2	chr12:40273800-40281000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr12:40274000-40281000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr12:40278400-40282000	Enhancers	Brain Germinal Matrix	brain
5	chr12:40280200-40281000	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr12:40280200-40281200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr12:40280200-40281400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr12:40280200-40281400	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr12:40280400-40285400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr12:40280600-40281400	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr12:40280600-40281400	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr12:40280800-40281800	Weak transcription	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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