Variant report

Variant	rs57365904
Chromosome Location	chr3:89553945-89553946
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:89552929..89555388-chr3:89562292..89564625,2	MCF-7	breast:
2	chr3:89523628..89525803-chr3:89552585..89555851,3	MCF-7	breast:
3	chr3:89363341..89364322-chr3:89553265..89554099,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1104526	0.83[ASN][1000 genomes]
rs11915277	0.88[ASN][1000 genomes]
rs11923274	0.83[ASN][1000 genomes]
rs12107180	0.83[ASN][1000 genomes]
rs12107626	0.88[ASN][1000 genomes]
rs12107948	0.83[ASN][1000 genomes]
rs12374054	0.88[ASN][1000 genomes]
rs1398197	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1589334	0.83[ASN][1000 genomes]
rs2049103	0.83[ASN][1000 genomes]
rs2347212	0.83[ASN][1000 genomes]
rs41404046	0.88[ASN][1000 genomes]
rs55747951	0.83[ASN][1000 genomes]
rs55902329	0.88[ASN][1000 genomes]
rs56035503	0.88[ASN][1000 genomes]
rs56038553	0.88[ASN][1000 genomes]
rs56244740	0.83[ASN][1000 genomes]
rs56855556	0.88[ASN][1000 genomes]
rs57668063	0.88[ASN][1000 genomes]
rs59452230	0.83[ASN][1000 genomes]
rs59776964	0.88[ASN][1000 genomes]
rs6775558	0.88[ASN][1000 genomes]
rs6780506	0.88[ASN][1000 genomes]
rs6781083	0.83[ASN][1000 genomes]
rs6785223	0.83[ASN][1000 genomes]
rs6786215	0.88[ASN][1000 genomes]
rs6791162	0.83[ASN][1000 genomes]
rs72925618	0.88[ASN][1000 genomes]
rs72925631	0.88[ASN][1000 genomes]
rs72925647	0.88[ASN][1000 genomes]
rs72925649	0.88[ASN][1000 genomes]
rs72929604	0.83[ASN][1000 genomes]
rs72929621	0.83[ASN][1000 genomes]
rs72929630	0.83[ASN][1000 genomes]
rs72929638	0.83[ASN][1000 genomes]
rs72929643	0.83[ASN][1000 genomes]
rs7630914	0.88[ASN][1000 genomes]
rs7635408	0.88[ASN][1000 genomes]
rs7635646	0.88[ASN][1000 genomes]
rs763900	0.88[ASN][1000 genomes]
rs763901	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008018	chr3:89382031-90254063	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv536639	chr3:89382031-90254063	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1010932	chr3:89424428-90192503	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv590952	chr3:89493167-89727198	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1010021	chr3:89521983-90141988	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv524781	chr3:89543677-89597679	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv530024	chr3:89548440-90304841	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:89553400-89554000	Enhancers	Gastric	stomach
2	chr3:89553400-89556600	Enhancers	Ovary	ovary

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