Variant report

Variant	rs573670845
Chromosome Location	chr3:82178248-82178249
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007167	chr3:82050178-82301466	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv877041	chr3:82074024-82363196	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1008429	chr3:82089650-82510536	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv432460	chr3:82107110-82508010	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1005262	chr3:82165228-82258781	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1013820	chr3:82175705-82968181	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:82177400-82178600	Enhancers	Primary hematopoietic stem cells	blood
2	chr3:82177400-82179000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr3:82177400-82179400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr3:82177400-82181800	Weak transcription	Colon Smooth Muscle	Colon
5	chr3:82177600-82178400	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr3:82177600-82179000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr3:82177600-82179600	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr3:82177800-82178400	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr3:82177800-82178600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr3:82177800-82178800	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr3:82178000-82179800	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr3:82178200-82178600	Enhancers	Primary B cells from cord blood	blood
13	chr3:82178200-82178800	Enhancers	Primary neutrophils fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links