Variant report

Variant rs573790163
Chromosome Location chr5:180234467-180234468
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:127 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:180230600-180237000 Flanking Active TSS Monocytes-CD14+_RO01746 blood
2 chr5:180230800-180234800 Weak transcription A549 lung
3 chr5:180230800-180236200 Genic enhancers Fetal Adrenal Gland Adrenal Gland
4 chr5:180231000-180234600 Weak transcription iPS-18 Cell Line embryonic stem cell
5 chr5:180231000-180235200 Weak transcription ES-I3 Cell Line embryonic stem cell
6 chr5:180231000-180235200 Weak transcription HUES64 Cell Line embryonic stem cell
7 chr5:180231200-180235200 Weak transcription iPS-15b Cell Line embryonic stem cell
8 chr5:180231200-180236000 Genic enhancers Placenta Placenta
9 chr5:180231200-180236200 Genic enhancers Fetal Muscle Leg muscle
10 chr5:180231400-180235000 Weak transcription HSMMtube muscle
11 chr5:180231600-180235200 Weak transcription H1 Cell Line embryonic stem cell
12 chr5:180231600-180235400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
13 chr5:180231600-180235600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
14 chr5:180231800-180235800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
15 chr5:180232000-180235600 Weak transcription ES-WA7 Cell Line embryonic stem cell
16 chr5:180232200-180234800 Enhancers Primary Natural Killer cells fromperipheralblood blood
17 chr5:180232200-180235200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
18 chr5:180232400-180235200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
19 chr5:180232600-180234600 Flanking Active TSS Primary neutrophils fromperipheralblood blood
20 chr5:180232800-180236800 Flanking Active TSS Primary B cells from cord blood blood
21 chr5:180232800-180236800 Flanking Active TSS Primary T helper naive cells fromperipheralblood blood
22 chr5:180233000-180236000 Enhancers Stomach Mucosa stomach
23 chr5:180233200-180234600 Genic enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
24 chr5:180233200-180234600 Genic enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
25 chr5:180233200-180234800 Enhancers HUVEC blood vessel
26 chr5:180233200-180235000 Genic enhancers IMR90 fetal lung fibroblasts Cell Line lung
27 chr5:180233200-180235200 Transcr. at gene 5' and 3' Dnd41 blood
28 chr5:180233200-180236000 Genic enhancers Left Ventricle heart
29 chr5:180233200-180236400 Enhancers Fetal Heart heart
30 chr5:180233200-180236400 Enhancers Pancreas Pancrea
31 chr5:180233200-180236600 Flanking Active TSS Primary T cells from cord blood blood
32 chr5:180233200-180237000 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
33 chr5:180233400-180234600 Genic enhancers HUES6 Cell Line embryonic stem cell
34 chr5:180233400-180234600 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
35 chr5:180233400-180234600 Enhancers Aorta Aorta
36 chr5:180233400-180234600 Transcr. at gene 5' and 3' Fetal Intestine Large intestine
37 chr5:180233400-180234800 Transcr. at gene 5' and 3' Rectal Smooth Muscle rectum
38 chr5:180233400-180234800 Genic enhancers NH-A brain
39 chr5:180233400-180235000 Genic enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
40 chr5:180233400-180235000 Flanking Active TSS Foreskin Melanocyte Primary Cells skin03 Skin
41 chr5:180233400-180235000 Enhancers Right Atrium heart
42 chr5:180233400-180235000 Flanking Active TSS GM12878-XiMat blood
43 chr5:180233400-180235600 Flanking Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
44 chr5:180233400-180235800 Genic enhancers Lung lung
45 chr5:180233400-180236200 Flanking Active TSS Primary T helper memory cells from peripheral blood 2 blood
46 chr5:180233400-180236200 Flanking Active TSS Primary T helper naive cells from peripheral blood blood
47 chr5:180233400-180236200 Flanking Active TSS Primary T killer naive cells fromperipheralblood blood
48 chr5:180233400-180236200 Flanking Active TSS Primary T killer memory cells from peripheral blood blood
49 chr5:180233400-180236200 Flanking Active TSS Brain Angular Gyrus brain
50 chr5:180233400-180236200 Flanking Active TSS Brain Hippocampus Middle brain

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