Variant report

Variant	rs57383594
Chromosome Location	chr6:75288081-75288082
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs57694926	0.81[AFR][1000 genomes]
rs57844186	1.00[AFR][1000 genomes]
rs57946635	0.84[AFR][1000 genomes]
rs57949415	1.00[AFR][1000 genomes]
rs58149860	1.00[AFR][1000 genomes]
rs58981972	0.91[AFR][1000 genomes]
rs59591441	1.00[AFR][1000 genomes]
rs59825856	0.91[AFR][1000 genomes]
rs60638449	1.00[AFR][1000 genomes]
rs60709091	0.81[AFR][1000 genomes]
rs61118430	1.00[AFR][1000 genomes]
rs61197116	0.91[AFR][1000 genomes]
rs6902360	0.81[AFR][1000 genomes]
rs6902750	1.00[AFR][1000 genomes]
rs73450034	0.82[AFR][1000 genomes]
rs73450094	0.82[AFR][1000 genomes]
rs73450096	0.82[AFR][1000 genomes]
rs73450097	0.82[AFR][1000 genomes]
rs73450100	0.82[AFR][1000 genomes]
rs73453944	1.00[AFR][1000 genomes]
rs73453947	1.00[AFR][1000 genomes]
rs73453957	1.00[AFR][1000 genomes]
rs73453960	1.00[AFR][1000 genomes]
rs73453961	1.00[AFR][1000 genomes]
rs73453990	1.00[AFR][1000 genomes]
rs73453996	1.00[AFR][1000 genomes]
rs73455907	1.00[AFR][1000 genomes]
rs73455910	1.00[AFR][1000 genomes]
rs73455916	1.00[AFR][1000 genomes]
rs73455920	1.00[AFR][1000 genomes]
rs73455925	0.84[AFR][1000 genomes]
rs73455926	0.84[AFR][1000 genomes]
rs73455927	0.91[AFR][1000 genomes]
rs73455933	1.00[AFR][1000 genomes]
rs73455936	1.00[AFR][1000 genomes]
rs73455942	1.00[AFR][1000 genomes]
rs73455943	1.00[AFR][1000 genomes]
rs73455947	1.00[AFR][1000 genomes]
rs73455951	1.00[AFR][1000 genomes]
rs73455960	1.00[AFR][1000 genomes]
rs73455964	1.00[AFR][1000 genomes]
rs73455975	1.00[AFR][1000 genomes]
rs7752406	1.00[AFR][1000 genomes]
rs7775011	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917283	chr6:75234428-75641440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv830694	chr6:75245483-75446282	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75284600-75289000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:75286800-75288600	Enhancers	GM12878-XiMat	blood
3	chr6:75286800-75289200	Enhancers	NHDF-Ad	bronchial
4	chr6:75286800-75290000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:75286800-75290000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:75287200-75288200	Enhancers	Primary hematopoietic stem cells	blood
7	chr6:75287200-75288200	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr6:75287200-75288200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr6:75287200-75288200	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr6:75287200-75288400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:75287200-75288600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:75287200-75289200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:75287200-75289200	Enhancers	Osteobl	bone
14	chr6:75287200-75289400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:75287200-75289400	Enhancers	Hela-S3	cervix
16	chr6:75287200-75289400	Enhancers	NHLF	lung
17	chr6:75287200-75289600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:75287200-75289800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr6:75287400-75288200	Enhancers	Brain Cingulate Gyrus	brain
20	chr6:75287400-75288200	Enhancers	HUVEC	blood vessel
21	chr6:75287400-75288800	Enhancers	HSMM	muscle
22	chr6:75287400-75289200	Enhancers	NH-A	brain
23	chr6:75287400-75289800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr6:75287600-75288200	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr6:75287600-75288800	Enhancers	Muscle Satellite Cultured Cells	--
26	chr6:75288000-75288400	Enhancers	HSMMtube	muscle
27	chr6:75288000-75288600	Enhancers	A549	lung

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