Variant report

Variant	rs73455927
Chromosome Location	chr6:75283558-75283559
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs57383594	0.91[AFR][1000 genomes]
rs57844186	0.91[AFR][1000 genomes]
rs57949415	0.91[AFR][1000 genomes]
rs58149860	0.91[AFR][1000 genomes]
rs58981972	0.84[AFR][1000 genomes]
rs59591441	0.91[AFR][1000 genomes]
rs59825856	0.84[AFR][1000 genomes]
rs60638449	0.91[AFR][1000 genomes]
rs61118430	0.91[AFR][1000 genomes]
rs61197116	0.84[AFR][1000 genomes]
rs6902750	0.91[AFR][1000 genomes]
rs73453944	0.91[AFR][1000 genomes]
rs73453947	0.91[AFR][1000 genomes]
rs73453957	0.91[AFR][1000 genomes]
rs73453960	0.91[AFR][1000 genomes]
rs73453961	0.91[AFR][1000 genomes]
rs73453990	0.91[AFR][1000 genomes]
rs73453996	0.91[AFR][1000 genomes]
rs73455907	0.91[AFR][1000 genomes]
rs73455910	0.91[AFR][1000 genomes]
rs73455916	0.91[AFR][1000 genomes]
rs73455920	0.91[AFR][1000 genomes]
rs73455933	0.91[AFR][1000 genomes]
rs73455936	0.91[AFR][1000 genomes]
rs73455942	0.91[AFR][1000 genomes]
rs73455943	0.91[AFR][1000 genomes]
rs73455947	0.91[AFR][1000 genomes]
rs73455951	0.91[AFR][1000 genomes]
rs73455960	0.91[AFR][1000 genomes]
rs73455964	0.91[AFR][1000 genomes]
rs73455975	0.91[AFR][1000 genomes]
rs7752406	0.91[AFR][1000 genomes]
rs7775011	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917283	chr6:75234428-75641440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv830694	chr6:75245483-75446282	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75278800-75287200	Weak transcription	NHLF	lung
2	chr6:75282800-75284800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:75283000-75284400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:75283400-75283600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:75283400-75284000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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