Variant report

Variant	rs57386605
Chromosome Location	chr13:63741755-63741756
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs56726569	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56759005	1.00[AMR][1000 genomes]
rs57182904	0.80[AFR][1000 genomes]
rs57560065	0.98[AFR][1000 genomes]
rs58671406	0.86[AFR][1000 genomes]
rs60165385	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73503655	0.98[AFR][1000 genomes]
rs73503659	0.98[AFR][1000 genomes]
rs73503660	0.98[AFR][1000 genomes]
rs73503664	0.98[AFR][1000 genomes]
rs73503665	0.98[AFR][1000 genomes]
rs73503667	0.98[AFR][1000 genomes]
rs73503671	0.98[AFR][1000 genomes]
rs73503678	0.86[AFR][1000 genomes]
rs73503683	0.98[AFR][1000 genomes]
rs73505741	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73505742	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73505781	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73505788	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73505789	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73507807	0.80[AFR][1000 genomes]
rs73507810	0.80[AFR][1000 genomes]
rs73507815	0.82[AFR][1000 genomes]
rs73507816	0.82[AFR][1000 genomes]
rs73507820	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753514	chr13:63221699-63959299	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1054643	chr13:63501148-63755650	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv900274	chr13:63511841-63864603	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv900275	chr13:63511841-63865669	Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1039454	chr13:63545468-63826462	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv541798	chr13:63545468-63826462	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1045647	chr13:63545468-64082080	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv541799	chr13:63545468-64082080	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv900276	chr13:63638329-63784286	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv900277	chr13:63666149-63892905	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv1052016	chr13:63704346-63826462	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv541800	chr13:63704346-63826462	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv1039661	chr13:63736333-64287558	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
14	nsv541801	chr13:63736333-64287558	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:63741200-63741800	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr13:63741200-63741800	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr13:63741600-63741800	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr13:63741600-63742000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr13:63741600-63742000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr13:63741600-63742000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr13:63741600-63742000	Weak transcription	Fetal Brain Female	brain
8	chr13:63741600-63742600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr13:63741600-63742800	Enhancers	HUES64 Cell Line	embryonic stem cell

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