Variant report

Variant	rs73505788
Chromosome Location	chr13:63758725-63758726
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs56726569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56759005	1.00[AMR][1000 genomes]
rs57182904	0.85[AFR][1000 genomes]
rs57386605	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57560065	0.89[AFR][1000 genomes]
rs60165385	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73503655	0.89[AFR][1000 genomes]
rs73503659	0.89[AFR][1000 genomes]
rs73503660	0.89[AFR][1000 genomes]
rs73503664	0.89[AFR][1000 genomes]
rs73503665	0.89[AFR][1000 genomes]
rs73503667	0.89[AFR][1000 genomes]
rs73503671	0.89[AFR][1000 genomes]
rs73503683	0.89[AFR][1000 genomes]
rs73505741	1.00[AMR][1000 genomes]
rs73505742	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73505781	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73505789	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73507807	0.85[AFR][1000 genomes]
rs73507810	0.85[AFR][1000 genomes]
rs73507815	0.87[AFR][1000 genomes]
rs73507816	0.87[AFR][1000 genomes]
rs73507820	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753514	chr13:63221699-63959299	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv900274	chr13:63511841-63864603	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv900275	chr13:63511841-63865669	Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1039454	chr13:63545468-63826462	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv541798	chr13:63545468-63826462	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1045647	chr13:63545468-64082080	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv541799	chr13:63545468-64082080	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv900276	chr13:63638329-63784286	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv900277	chr13:63666149-63892905	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1052016	chr13:63704346-63826462	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv541800	chr13:63704346-63826462	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv1039661	chr13:63736333-64287558	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv541801	chr13:63736333-64287558	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:63758200-63759000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr13:63758400-63759200	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr13:63758400-63759400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr13:63758400-63759400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr13:63758600-63759200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr13:63758600-63759200	Enhancers	NH-A	brain

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