Variant report

Variant	rs57389925
Chromosome Location	chr1:103322392-103322393
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs553038	1.00[AFR][1000 genomes]
rs55937921	1.00[AFR][1000 genomes]
rs57437661	1.00[AFR][1000 genomes]
rs59896004	0.84[AFR][1000 genomes]
rs60602655	1.00[AFR][1000 genomes]
rs74108014	1.00[AFR][1000 genomes]
rs74108015	1.00[AFR][1000 genomes]
rs74108016	1.00[AFR][1000 genomes]
rs74108017	1.00[AFR][1000 genomes]
rs74108018	1.00[AFR][1000 genomes]
rs74108021	1.00[AFR][1000 genomes]
rs74108023	1.00[AFR][1000 genomes]
rs74108025	1.00[AFR][1000 genomes]
rs74108026	0.84[AFR][1000 genomes]
rs74108034	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830882	chr1:103192683-103355802	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv522922	chr1:103305021-103764640	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:103318400-103324000	Weak transcription	Osteobl	bone
2	chr1:103318400-103324600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:103320600-103324000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:103321000-103322400	Weak transcription	Fetal Intestine Large	intestine
5	chr1:103322200-103323800	Weak transcription	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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