Variant report

Variant	rs59896004
Chromosome Location	chr1:103325227-103325228
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs553038	0.84[AFR][1000 genomes]
rs55937921	0.84[AFR][1000 genomes]
rs57389925	0.84[AFR][1000 genomes]
rs57437661	0.84[AFR][1000 genomes]
rs60602655	0.84[AFR][1000 genomes]
rs74108014	0.84[AFR][1000 genomes]
rs74108015	0.84[AFR][1000 genomes]
rs74108016	0.84[AFR][1000 genomes]
rs74108017	0.84[AFR][1000 genomes]
rs74108018	0.84[AFR][1000 genomes]
rs74108021	0.84[AFR][1000 genomes]
rs74108023	0.84[AFR][1000 genomes]
rs74108025	0.84[AFR][1000 genomes]
rs74108026	1.00[AFR][1000 genomes]
rs74108029	0.92[AFR][1000 genomes]
rs74108034	1.00[AFR][1000 genomes]
rs74108052	0.92[AFR][1000 genomes]
rs74108055	0.92[AFR][1000 genomes]
rs74110504	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830882	chr1:103192683-103355802	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv522922	chr1:103305021-103764640	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:103324800-103334200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:103325000-103326600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr1:103325000-103327800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links