Variant report

Variant	rs57390516
Chromosome Location	chr3:54794266-54794267
allele	-/TCTGA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014595	chr3:53944473-54846754	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv834700	chr3:54637374-54803896	Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv522779	chr3:54793450-54803521	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
4	nsv524822	chr3:54793450-54803521	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
5	esv2497019	chr3:54794263-54794267	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv2005455	chr3:54794266-54794271	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:54784600-54797200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr3:54785800-54798200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr3:54787400-54800200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr3:54787600-54804600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:54790000-54794400	Enhancers	Fetal Stomach	stomach
6	chr3:54790600-54794600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:54793600-54794600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr3:54793800-54794400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:54793800-54794400	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr3:54793800-54794400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr3:54793800-54795800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr3:54793800-54796600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr3:54794000-54794600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr3:54794000-54794600	Enhancers	NH-A	brain
15	chr3:54794000-54796200	Enhancers	NHDF-Ad	bronchial
16	chr3:54794200-54795000	Enhancers	Fetal Muscle Leg	muscle
17	chr3:54794200-54796200	Enhancers	NHLF	lung
18	chr3:54794200-54806800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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