Variant report

Variant	rs57394993
Chromosome Location	chr11:15957514-15957515
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1371917	0.82[AMR][1000 genomes]
rs16932353	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55750551	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58114630	0.92[EUR][1000 genomes]
rs59732174	0.92[EUR][1000 genomes]
rs73430964	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv832074	chr11:15927105-16100772	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15955000-15957800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr11:15955000-15958200	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr11:15955200-15957600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr11:15955200-15958000	Enhancers	Sigmoid Colon	Sigmoid Colon
5	chr11:15955600-15958800	Weak transcription	Osteobl	bone
6	chr11:15956200-15957600	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:15956200-15957800	Enhancers	Colonic Mucosa	Colon
8	chr11:15956200-15959200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr11:15956400-15963000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:15957400-15957600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr11:15957400-15959000	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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