Variant report

Variant	rs73430964
Chromosome Location	chr11:15933385-15933386
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:5)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:15932707..15934813-chr11:15985160..15987558,2	MCF-7	breast:
2	chr11:15924300..15926457-chr11:15932975..15935932,2	K562	blood:

(count:5 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SOX6-1	chr11:15933334-15933620	XLOC_009382
2	lnc-INSC-3	chr11:15933277-15933430	XLOC_009075
3	lnc-INSC-3	chr11:15933323-15933430	ENSG00000254661
4	lnc-INSC-3	chr11:15933328-15933430	ENSG00000254661
5	lnc-INSC-3	chr11:15933329-15933430	NONHSAT018165

No data

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2582302	0.81[ASN][1000 genomes]
rs55750551	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57394993	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58114630	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59732174	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60979357	0.83[ASN][1000 genomes]
rs7936455	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv832074	chr11:15927105-16100772	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv818799	chr11:15930472-15946803	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15919800-15934400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr11:15928600-15941800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:15931400-15934200	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr11:15931600-15935800	Enhancers	Fetal Heart	heart
5	chr11:15931800-15934000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr11:15932000-15933600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr11:15932000-15933800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:15932000-15933800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr11:15932000-15935200	Enhancers	Fetal Muscle Leg	muscle
10	chr11:15932000-15935600	Enhancers	Fetal Muscle Trunk	muscle
11	chr11:15932200-15933400	Enhancers	Placenta	Placenta
12	chr11:15932200-15933400	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr11:15932600-15933800	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr11:15932600-15933800	Enhancers	Fetal Lung	lung
15	chr11:15932600-15935000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr11:15932800-15933600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr11:15932800-15935000	Enhancers	Fetal Stomach	stomach
18	chr11:15933000-15933600	Enhancers	Left Ventricle	heart
19	chr11:15933000-15933600	Enhancers	Lung	lung
20	chr11:15933000-15933800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr11:15933000-15934000	Enhancers	Brain Germinal Matrix	brain
22	chr11:15933000-15934000	Enhancers	Spleen	Spleen
23	chr11:15933000-15934400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr11:15933200-15933600	Enhancers	Fetal Brain Female	brain
25	chr11:15933200-15933600	Enhancers	Stomach Smooth Muscle	stomach
26	chr11:15933200-15933600	Enhancers	Osteobl	bone
27	chr11:15933200-15933800	Enhancers	Primary hematopoietic stem cells	blood
28	chr11:15933200-15934200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr11:15933200-15934600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr11:15933200-15935600	Enhancers	Right Ventricle	heart
31	chr11:15933200-15935600	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr11:15933200-15936000	Enhancers	Right Atrium	heart

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