Variant report

Variant	rs574043709
Chromosome Location	chr9:110504816-110504817
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:110503474..110505849-chr9:110510284..110512558,2	MCF-7	breast:
2	chr9:110251154..110252819-chr9:110502244..110504957,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136826	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427850	chr9:110456613-110632324	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv428221	chr9:110456613-110632324	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv520911	chr9:110504358-110517794	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110496000-110510800	Weak transcription	Aorta	Aorta
2	chr9:110497200-110506600	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr9:110497200-110506800	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr9:110497400-110510800	Weak transcription	Psoas Muscle	Psoas
5	chr9:110499800-110505200	Enhancers	Adipose Nuclei	Adipose
6	chr9:110500000-110505000	Weak transcription	Spleen	Spleen
7	chr9:110500800-110511600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr9:110501000-110507000	Weak transcription	GM12878-XiMat	blood
9	chr9:110501200-110510600	Weak transcription	Brain Anterior Caudate	brain
10	chr9:110502600-110511600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr9:110503000-110510400	Weak transcription	Right Ventricle	heart
12	chr9:110503000-110510600	Weak transcription	Left Ventricle	heart
13	chr9:110503000-110510800	Weak transcription	Placenta	Placenta
14	chr9:110503000-110511400	Weak transcription	NHLF	lung
15	chr9:110503600-110505200	Enhancers	Fetal Lung	lung
16	chr9:110504000-110505600	Enhancers	Ovary	ovary
17	chr9:110504200-110505200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr9:110504200-110505200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr9:110504200-110505200	Enhancers	NHEK	skin
20	chr9:110504400-110505000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr9:110504400-110505400	Enhancers	Fetal Stomach	stomach
22	chr9:110504400-110512000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr9:110504600-110505200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr9:110504600-110505200	Enhancers	Fetal Muscle Leg	muscle
25	chr9:110504800-110505200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr9:110504800-110505200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr9:110504800-110505200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr9:110504800-110505200	Enhancers	Esophagus	oesophagus
29	chr9:110504800-110505200	Enhancers	Fetal Brain Male	brain
30	chr9:110504800-110505200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
31	chr9:110504800-110505400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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