Variant report

Variant	rs57410072
Chromosome Location	chr15:59118085-59118086
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:59116572..59119429-chr15:59127438..59129580,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16940795	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28675733	1.00[EUR][1000 genomes]
rs4566091	1.00[EUR][1000 genomes]
rs4775112	1.00[EUR][1000 genomes]
rs57285066	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57783587	0.80[AFR][1000 genomes]
rs59576117	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60162496	1.00[EUR][1000 genomes]
rs6494042	1.00[EUR][1000 genomes]
rs7183738	1.00[EUR][1000 genomes]
rs8030378	1.00[EUR][1000 genomes]
rs881313	1.00[EUR][1000 genomes]
rs935364	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34110	chr15:58949991-59381634	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	esv1826703	chr15:59005922-59213678	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	esv1798487	chr15:59027139-59213678	Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv428638	chr15:59032300-59126567	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
5	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
6	nsv1035640	chr15:59105360-59190930	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59064600-59145600	Weak transcription	Gastric	stomach
2	chr15:59065800-59142800	Weak transcription	Aorta	Aorta
3	chr15:59067000-59157800	Weak transcription	Hela-S3	cervix
4	chr15:59069600-59119000	Weak transcription	Fetal Brain Male	brain
5	chr15:59069800-59121400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr15:59075000-59139800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr15:59077800-59122000	Weak transcription	Brain Substantia Nigra	brain
8	chr15:59077800-59153600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr15:59086200-59125800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr15:59086400-59125800	Weak transcription	Right Ventricle	heart
11	chr15:59088400-59119200	Weak transcription	Colonic Mucosa	Colon
12	chr15:59090200-59156600	Weak transcription	Small Intestine	intestine
13	chr15:59090400-59121600	Weak transcription	Fetal Heart	heart
14	chr15:59094200-59122800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr15:59095200-59156800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr15:59100400-59122200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr15:59100400-59139800	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr15:59102000-59126400	Weak transcription	Stomach Mucosa	stomach
19	chr15:59103200-59135200	Weak transcription	Pancreas	Pancrea
20	chr15:59103400-59119800	Weak transcription	HUVEC	blood vessel
21	chr15:59103400-59120200	Weak transcription	GM12878-XiMat	blood
22	chr15:59103600-59148800	Weak transcription	A549	lung
23	chr15:59103800-59119000	Weak transcription	Dnd41	blood
24	chr15:59103800-59122000	Weak transcription	Colon Smooth Muscle	Colon
25	chr15:59103800-59133000	Weak transcription	Spleen	Spleen
26	chr15:59103800-59157000	Weak transcription	Psoas Muscle	Psoas
27	chr15:59104000-59118600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr15:59104000-59118600	Weak transcription	Fetal Brain Female	brain
29	chr15:59104000-59120000	Weak transcription	Primary B cells from peripheral blood	blood
30	chr15:59104000-59122200	Weak transcription	Brain Angular Gyrus	brain
31	chr15:59104000-59122400	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr15:59104000-59122600	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr15:59104000-59125200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr15:59104000-59125600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr15:59104000-59126800	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr15:59104000-59137600	Weak transcription	Liver	Liver
37	chr15:59104000-59139800	Weak transcription	Fetal Lung	lung
38	chr15:59104000-59146600	Weak transcription	NH-A	brain
39	chr15:59104000-59148400	Weak transcription	Rectal Smooth Muscle	rectum
40	chr15:59104000-59157000	Weak transcription	Esophagus	oesophagus
41	chr15:59104000-59157200	Weak transcription	NHLF	lung
42	chr15:59105000-59139800	Weak transcription	HMEC	breast
43	chr15:59105600-59125400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr15:59105800-59118600	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr15:59106000-59119000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr15:59106000-59122600	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr15:59106000-59139200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr15:59106000-59139600	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr15:59106000-59156800	Weak transcription	Lung	lung
50	chr15:59106200-59118600	Weak transcription	Adipose Nuclei	Adipose

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