Variant report

Variant	rs935364
Chromosome Location	chr15:59302245-59302246
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:59224817..59226951-chr15:59300830..59302475,2	MCF-7	breast:
2	chr15:59293658..59297788-chr15:59301854..59304801,3	K562	blood:
3	chr15:59301771..59304515-chr15:59313668..59315454,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137776	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16940795	1.00[EUR][1000 genomes]
rs28675733	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4566091	1.00[EUR][1000 genomes]
rs4775112	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4775122	1.00[EUR][1000 genomes]
rs57285066	1.00[EUR][1000 genomes]
rs57410072	1.00[EUR][1000 genomes]
rs59576117	1.00[EUR][1000 genomes]
rs6494042	1.00[EUR][1000 genomes]
rs7166690	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34110	chr15:58949991-59381634	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
3	esv1850946	chr15:59174539-59429160	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
4	nsv904271	chr15:59249584-59393011	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv520679	chr15:59268410-59376531	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv520872	chr15:59268410-59395184	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59280800-59308800	Weak transcription	Esophagus	oesophagus
2	chr15:59280800-59327800	Weak transcription	Small Intestine	intestine
3	chr15:59281200-59352600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr15:59281400-59305800	Weak transcription	Brain Substantia Nigra	brain
5	chr15:59281400-59323200	Weak transcription	Ovary	ovary
6	chr15:59281400-59347800	Weak transcription	Colonic Mucosa	Colon
7	chr15:59281600-59311000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr15:59281800-59352200	Weak transcription	Aorta	Aorta
9	chr15:59281800-59353400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr15:59282000-59305800	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr15:59282000-59323000	Weak transcription	Fetal Lung	lung
12	chr15:59282000-59323200	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr15:59282000-59323200	Weak transcription	Fetal Kidney	kidney
14	chr15:59282400-59305400	Weak transcription	Fetal Heart	heart
15	chr15:59282400-59308600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr15:59282400-59323200	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr15:59282400-59323400	Weak transcription	NHLF	lung
18	chr15:59282600-59306400	Weak transcription	Brain Angular Gyrus	brain
19	chr15:59283600-59305600	Weak transcription	Stomach Mucosa	stomach
20	chr15:59283800-59305600	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr15:59283800-59313400	Weak transcription	Right Atrium	heart
22	chr15:59283800-59329000	Weak transcription	Pancreas	Pancrea
23	chr15:59283800-59344800	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr15:59283800-59359000	Weak transcription	Fetal Brain Male	brain
25	chr15:59284000-59305600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr15:59284600-59305600	Weak transcription	Brain Cingulate Gyrus	brain
27	chr15:59284600-59308800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr15:59284600-59323000	Weak transcription	Fetal Muscle Trunk	muscle
29	chr15:59284800-59308800	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr15:59284800-59323000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr15:59285000-59308800	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr15:59285000-59323000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr15:59285000-59328000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr15:59285200-59323000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr15:59285200-59323000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr15:59286000-59305200	Weak transcription	Colon Smooth Muscle	Colon
37	chr15:59287200-59307800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr15:59287400-59305000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr15:59287400-59319000	Weak transcription	Brain Germinal Matrix	brain
40	chr15:59287600-59305800	Weak transcription	Brain Anterior Caudate	brain
41	chr15:59288400-59351200	Weak transcription	Brain Hippocampus Middle	brain
42	chr15:59292200-59321600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr15:59293200-59309800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr15:59293400-59305000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr15:59293400-59311600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr15:59293800-59305600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr15:59293800-59317000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr15:59295200-59349200	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr15:59295400-59303600	Weak transcription	Psoas Muscle	Psoas
50	chr15:59295400-59308000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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