Variant report

Variant	rs7166690
Chromosome Location	chr15:59453681-59453682
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:59453317..59454057-chr15:59785026..59785536,2	K562	blood:
2	chr15:59453294..59454240-chr15:59784784..59785726,7	MCF-7	breast:
3	chr15:59453184..59454047-chr15:59793375..59794182,4	MCF-7	breast:
4	chr15:59453203..59454132-chr15:59793468..59794690,4	K562	blood:
5	chr15:59272484..59273573-chr15:59453101..59454034,3	MCF-7	breast:
6	chr15:59453187..59454025-chr15:59467029..59467674,2	MCF-7	breast:
7	chr15:59453557..59454079-chr15:59462997..59463529,2	K562	blood:

Variant related genes	Relation type
ENSG00000253030	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11071415	1.00[EUR][1000 genomes]
rs11636223	1.00[EUR][1000 genomes]
rs4775112	1.00[EUR][1000 genomes]
rs4775122	1.00[EUR][1000 genomes]
rs4775127	1.00[EUR][1000 genomes]
rs4775132	1.00[EUR][1000 genomes]
rs4775133	1.00[EUR][1000 genomes]
rs4775134	1.00[EUR][1000 genomes]
rs6494076	1.00[EUR][1000 genomes]
rs7166294	1.00[EUR][1000 genomes]
rs935364	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv833025	chr15:59336148-59522176	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv1035868	chr15:59402426-59530594	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59398000-59462000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr15:59424400-59461400	Strong transcription	Hela-S3	cervix
3	chr15:59425200-59455200	Strong transcription	Fetal Intestine Small	intestine
4	chr15:59425400-59455200	Strong transcription	Fetal Intestine Large	intestine
5	chr15:59425800-59459600	Strong transcription	Liver	Liver
6	chr15:59431800-59467200	Weak transcription	Fetal Brain Female	brain
7	chr15:59432000-59465600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:59432600-59457400	Strong transcription	Placenta	Placenta
9	chr15:59433400-59456000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr15:59434000-59457600	Strong transcription	GM12878-XiMat	blood
11	chr15:59434200-59467000	Strong transcription	Rectal Mucosa Donor 31	rectum
12	chr15:59434400-59455600	Strong transcription	Sigmoid Colon	Sigmoid Colon
13	chr15:59434600-59455400	Strong transcription	Adipose Nuclei	Adipose
14	chr15:59434600-59455600	Strong transcription	Primary B cells from peripheral blood	blood
15	chr15:59434600-59455800	Strong transcription	Rectal Mucosa Donor 29	rectum
16	chr15:59436000-59473000	Weak transcription	Brain Germinal Matrix	brain
17	chr15:59436200-59456000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr15:59437800-59484400	Weak transcription	Fetal Brain Male	brain
19	chr15:59438000-59458400	Strong transcription	Duodenum Mucosa	Duodenum
20	chr15:59441000-59455400	Strong transcription	Muscle Satellite Cultured Cells	--
21	chr15:59441000-59457800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr15:59441000-59458000	Strong transcription	A549	lung
23	chr15:59441200-59457800	Strong transcription	Osteobl	bone
24	chr15:59441600-59454600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr15:59441600-59455400	Strong transcription	HUES6 Cell Line	embryonic stem cell
26	chr15:59441800-59455400	Strong transcription	HUES64 Cell Line	embryonic stem cell
27	chr15:59441800-59459600	Strong transcription	HUES48 Cell Line	embryonic stem cell
28	chr15:59442400-59453800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr15:59442400-59455400	Strong transcription	Fetal Stomach	stomach
30	chr15:59442400-59457600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr15:59442600-59454400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr15:59442600-59457800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr15:59442800-59457600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr15:59443200-59462600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr15:59443400-59461800	Weak transcription	Thymus	Thymus
36	chr15:59443400-59462400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr15:59444000-59457000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr15:59444600-59453800	Strong transcription	Right Ventricle	heart
39	chr15:59445600-59479600	Weak transcription	Fetal Kidney	kidney
40	chr15:59445800-59462000	Weak transcription	Stomach Mucosa	stomach
41	chr15:59445800-59467000	Weak transcription	Fetal Heart	heart
42	chr15:59446000-59455400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr15:59447000-59463600	Weak transcription	Primary B cells from cord blood	blood
44	chr15:59448600-59454200	Strong transcription	Duodenum Smooth Muscle	Duodenum
45	chr15:59449200-59455400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr15:59449200-59456200	Strong transcription	HUVEC	blood vessel
47	chr15:59449400-59454000	Strong transcription	NHEK	skin
48	chr15:59449600-59454000	Strong transcription	H1 Cell Line	embryonic stem cell
49	chr15:59449600-59454000	Strong transcription	NHLF	lung
50	chr15:59449600-59455000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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