Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:7204099..7206032-chr2:7209329..7211662,2	MCF-7	breast:
2	chr2:7202953..7205552-chr2:7208876..7210549,3	K562	blood:

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs62107978	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6431843	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6431844	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6712224	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6726858	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7575969	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469394	chr2:7197199-7230988	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv580914	chr2:7197199-7230988	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv915888	chr2:7197783-7461967	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:7189400-7213800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr2:7194200-7234000	Weak transcription	Pancreas	Pancrea
3	chr2:7194400-7210800	Weak transcription	Lung	lung
4	chr2:7194600-7206400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr2:7195000-7217000	Weak transcription	Fetal Muscle Leg	muscle
6	chr2:7202800-7205000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
7	chr2:7203000-7211400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr2:7203000-7214400	Weak transcription	Fetal Kidney	kidney
9	chr2:7203000-7217600	Weak transcription	Adipose Nuclei	Adipose
10	chr2:7203400-7204800	Weak transcription	Aorta	Aorta
11	chr2:7203400-7205000	Strong transcription	Primary T cells from cord blood	blood
12	chr2:7203400-7214000	Weak transcription	Fetal Stomach	stomach
13	chr2:7203600-7204800	Weak transcription	Colon Smooth Muscle	Colon
14	chr2:7204000-7204800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr2:7204000-7205400	Strong transcription	Dnd41	blood
16	chr2:7204000-7208600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr2:7204000-7214000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr2:7204400-7204800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr2:7204400-7208200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr2:7204400-7218600	Weak transcription	Primary T helper cells fromperipheralblood	blood

Quick Search: