Variant report

Variant	rs62107978
Chromosome Location	chr2:7211482-7211483
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:7204099..7206032-chr2:7209329..7211662,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs57420744	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6431843	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6431844	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6712224	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6726858	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7575969	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469394	chr2:7197199-7230988	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv580914	chr2:7197199-7230988	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv915888	chr2:7197783-7461967	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:7189400-7213800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr2:7194200-7234000	Weak transcription	Pancreas	Pancrea
3	chr2:7195000-7217000	Weak transcription	Fetal Muscle Leg	muscle
4	chr2:7203000-7214400	Weak transcription	Fetal Kidney	kidney
5	chr2:7203000-7217600	Weak transcription	Adipose Nuclei	Adipose
6	chr2:7203400-7214000	Weak transcription	Fetal Stomach	stomach
7	chr2:7204000-7214000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr2:7204400-7218600	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr2:7209000-7211800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr2:7209400-7218600	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr2:7210600-7211800	Weak transcription	HepG2	liver
12	chr2:7210600-7212400	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr2:7210600-7214000	Weak transcription	Brain Angular Gyrus	brain
14	chr2:7210600-7214200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
15	chr2:7210800-7211600	ZNF genes & repeats	Lung	lung
16	chr2:7210800-7213200	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr2:7210800-7213200	Strong transcription	Primary T cells from cord blood	blood
18	chr2:7211400-7211600	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr2:7211400-7212200	Strong transcription	Dnd41	blood
20	chr2:7211400-7213000	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr2:7211400-7217000	Weak transcription	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links