Variant report

Variant	rs574260033
Chromosome Location	chr6:166918919-166918920
allele	-/ATTT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:166914781..166916706-chr6:166917616..166920240,2	K562	blood:
2	chr6:166917042..166919348-chr6:166921352..166923866,2	K562	blood:

Variant related genes	Relation type
ENSG00000071242	Chromatin interaction
ENSG00000222958	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886937	chr6:166830696-166922813	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv886939	chr6:166859725-166922813	Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv886941	chr6:166907173-166996991	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA	5 gene(s)	inside rSNPs	diseases
6	esv3379494	chr6:166918862-166923360	Strong transcription Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166862400-166920600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:166890600-166925200	Weak transcription	Colon Smooth Muscle	Colon
3	chr6:166893000-166923200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:166893600-166921400	Weak transcription	Fetal Brain Male	brain
5	chr6:166894800-166928400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:166897600-166922400	Weak transcription	HSMMtube	muscle
7	chr6:166899400-166929400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:166901000-166954800	Weak transcription	Rectal Smooth Muscle	rectum
9	chr6:166901400-166922000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:166902200-166954400	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr6:166902400-166922600	Weak transcription	Thymus	Thymus
12	chr6:166902400-166923600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr6:166902600-166952800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr6:166903000-166919200	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr6:166903000-166925400	Strong transcription	Primary neutrophils fromperipheralblood	blood
16	chr6:166903800-166922000	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr6:166904000-166923800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr6:166905000-166925200	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr6:166905000-166928200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:166905000-166928400	Weak transcription	HSMM	muscle
21	chr6:166906200-166921000	Weak transcription	Fetal Kidney	kidney
22	chr6:166906600-166923200	Strong transcription	Gastric	stomach
23	chr6:166906600-166923800	Strong transcription	Fetal Stomach	stomach
24	chr6:166906600-166925000	Strong transcription	Adipose Nuclei	Adipose
25	chr6:166906600-166925200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr6:166906800-166919800	Strong transcription	Brain Germinal Matrix	brain
27	chr6:166907000-166923200	Strong transcription	Fetal Brain Female	brain
28	chr6:166907800-166923000	Strong transcription	Lung	lung
29	chr6:166909200-166921600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr6:166909200-166921800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr6:166909400-166928400	Strong transcription	Muscle Satellite Cultured Cells	--
32	chr6:166909600-166943800	Weak transcription	Colonic Mucosa	Colon
33	chr6:166910400-166923200	Strong transcription	Cortex derived primary cultured neurospheres	brain
34	chr6:166910600-166920600	Weak transcription	Fetal Lung	lung
35	chr6:166910600-166923400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr6:166910800-166923800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr6:166911000-166919000	Strong transcription	Pancreas	Pancrea
38	chr6:166911000-166922200	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr6:166911000-166923200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr6:166911200-166928200	Weak transcription	NH-A	brain
41	chr6:166911400-166924400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr6:166911800-166923800	Strong transcription	Stomach Smooth Muscle	stomach
43	chr6:166912200-166919400	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr6:166912200-166927600	Weak transcription	HMEC	breast
45	chr6:166912200-166931200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr6:166913000-166929000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr6:166913000-166952000	Weak transcription	Primary T cells from cord blood	blood
48	chr6:166914400-166921000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr6:166915000-166920600	Weak transcription	Fetal Intestine Large	intestine
50	chr6:166915800-166921000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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