Variant report

Variant	rs574295357
Chromosome Location	chr20:23900765-23900766
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:23895606..23897789-chr20:23899245..23901665,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491876	chr20:23436633-24031374	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv833944	chr20:23806288-24021865	Bivalent Enhancer Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3432957	chr20:23858584-23901200	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1062441	chr20:23861343-23955100	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv3437111	chr20:23898252-23902550	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv979494	chr20:23900040-23910180	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23897400-23903000	Enhancers	Fetal Muscle Trunk	muscle
2	chr20:23897400-23903200	Enhancers	Fetal Muscle Leg	muscle
3	chr20:23898600-23903200	Enhancers	Primary T cells fromperipheralblood	blood
4	chr20:23899000-23902600	Enhancers	Fetal Thymus	thymus
5	chr20:23899400-23903400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr20:23899600-23903000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr20:23899800-23900800	Enhancers	Lung	lung
8	chr20:23899800-23902000	Enhancers	Primary T cells from cord blood	blood
9	chr20:23899800-23902000	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr20:23899800-23902200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr20:23899800-23902800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr20:23900000-23901000	Enhancers	Brain Anterior Caudate	brain
13	chr20:23900000-23902000	Enhancers	Stomach Smooth Muscle	stomach
14	chr20:23900000-23902200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
15	chr20:23900000-23902400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr20:23900000-23902400	Enhancers	Esophagus	oesophagus
17	chr20:23900000-23902600	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr20:23900000-23902800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr20:23900000-23902800	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr20:23900200-23901000	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr20:23900200-23901200	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr20:23900200-23901400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr20:23900200-23901800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr20:23900200-23901800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr20:23900200-23901800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr20:23900200-23901800	Enhancers	HMEC	breast
27	chr20:23900200-23902000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr20:23900200-23902000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
29	chr20:23900200-23902200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr20:23900200-23902200	Enhancers	HSMMtube	muscle
31	chr20:23900400-23900800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
32	chr20:23900400-23901000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr20:23900400-23901000	Enhancers	Gastric	stomach
34	chr20:23900400-23901000	Enhancers	Pancreas	Pancrea
35	chr20:23900400-23901200	Enhancers	Brain Cingulate Gyrus	brain
36	chr20:23900400-23901200	Enhancers	Duodenum Smooth Muscle	Duodenum
37	chr20:23900400-23901200	Enhancers	Placenta Amnion	Placenta Amnion
38	chr20:23900400-23901200	Enhancers	Thymus	Thymus
39	chr20:23900400-23901400	Enhancers	NHEK	skin
40	chr20:23900400-23901600	Enhancers	Osteobl	bone
41	chr20:23900400-23902000	Enhancers	Placenta	Placenta
42	chr20:23900400-23902200	Enhancers	NHDF-Ad	bronchial
43	chr20:23900400-23902400	Enhancers	Skeletal Muscle Male	skeletal muscle
44	chr20:23900600-23900800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr20:23900600-23900800	Enhancers	Fetal Lung	lung
46	chr20:23900600-23901000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr20:23900600-23901000	Enhancers	Left Ventricle	heart
48	chr20:23900600-23901200	Enhancers	ES-I3 Cell Line	embryonic stem cell
49	chr20:23900600-23901400	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr20:23900600-23901400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links