Variant report

Variant	rs57434520
Chromosome Location	chr5:115648765-115648766
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:115647669..115649812-chr5:115683571..115685304,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10054989	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10519454	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10519455	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12152996	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12518094	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12518933	0.82[ASN][1000 genomes]
rs12521345	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12521635	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1529443	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1582430	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2068456	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62384474	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62384478	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62384495	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6866938	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6873096	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6873950	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7711510	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7721593	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34146	chr5:115315944-115729919	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	esv2755349	chr5:115384101-115733101	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv882746	chr5:115566026-115704566	Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv882747	chr5:115566636-115662510	Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1017983	chr5:115578765-115713688	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv882748	chr5:115584159-115669950	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv869754	chr5:115634234-115696094	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv4968	chr5:115635771-115714856	Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv1018001	chr5:115640603-115660285	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs57434520	COMMD10	Cis_1M	lymphoblastoid	RTeQTL
rs57434520	COMMD10	cis	Muscle Skeletal	GTEx

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115634200-115664400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr5:115640800-115658200	Weak transcription	Colonic Mucosa	Colon
3	chr5:115641000-115653000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr5:115641400-115651800	Weak transcription	Esophagus	oesophagus
5	chr5:115642000-115654200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr5:115642400-115653000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr5:115642600-115654400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr5:115642800-115650800	Weak transcription	A549	lung
9	chr5:115642800-115655800	Weak transcription	Fetal Thymus	thymus
10	chr5:115643000-115653000	Weak transcription	Right Ventricle	heart
11	chr5:115643000-115656800	Weak transcription	Gastric	stomach
12	chr5:115643200-115650200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr5:115643200-115660200	Weak transcription	Placenta	Placenta
14	chr5:115643200-115664200	Weak transcription	Thymus	Thymus
15	chr5:115643200-115664800	Weak transcription	Pancreas	Pancrea
16	chr5:115643200-115669800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr5:115644000-115649000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr5:115644000-115649000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr5:115644000-115658600	Weak transcription	HSMM	muscle
20	chr5:115644200-115653200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr5:115644200-115655800	Weak transcription	HUVEC	blood vessel
22	chr5:115644400-115653000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr5:115644400-115653200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr5:115644400-115654200	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr5:115644400-115664800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr5:115644400-115671800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr5:115645000-115651200	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr5:115645000-115653000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr5:115645200-115653000	Weak transcription	Lung	lung
30	chr5:115645200-115653000	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr5:115645400-115649800	Weak transcription	Aorta	Aorta
32	chr5:115645400-115650000	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr5:115645400-115650200	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr5:115645600-115648800	Weak transcription	Adipose Nuclei	Adipose
35	chr5:115645600-115648800	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr5:115645600-115649200	Weak transcription	Primary B cells from peripheral blood	blood
37	chr5:115645600-115650000	Weak transcription	Primary B cells from cord blood	blood
38	chr5:115645600-115650000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr5:115645600-115651800	Weak transcription	Left Ventricle	heart
40	chr5:115645600-115652600	Weak transcription	Duodenum Mucosa	Duodenum
41	chr5:115645600-115653400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr5:115646000-115653000	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr5:115646400-115653200	Weak transcription	Brain Hippocampus Middle	brain
44	chr5:115646400-115656000	Weak transcription	Fetal Kidney	kidney
45	chr5:115646600-115651800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr5:115647000-115653000	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr5:115647200-115648800	Weak transcription	Primary hematopoietic stem cells	blood
48	chr5:115647200-115649400	Weak transcription	Primary T cells fromperipheralblood	blood
49	chr5:115647200-115650800	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr5:115647200-115653400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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