Variant report

Variant	rs5743655
Chromosome Location	chr11:71708904-71708905
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:71708770-71708936	Hela-S3	cervix:	n/a	n/a
2	POLR2A	chr11:71707998-71709024	A549	lung:	n/a	n/a
3	POLR2A	chr11:71707765-71727247	K562	blood:	n/a	n/a
4	POLR2A	chr11:71708711-71709029	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:71707937..71711570-chr11:71790035..71793811,3	K562	blood:

Variant related genes	Relation type
IL18BP	TF binding region
ENSG00000137497	Chromatin interaction
ENSG00000184154	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1062452	1.00[ASN][1000 genomes]
rs36029905	1.00[EUR][1000 genomes]
rs5743662	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5743664	1.00[ASN][1000 genomes]
rs5743669	1.00[ASN][1000 genomes]
rs5743670	1.00[ASN][1000 genomes]
rs5743678	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
2	nsv428262	chr11:71363639-71804055	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71660800-71709400	Weak transcription	Stomach Mucosa	stomach
2	chr11:71661000-71709600	Weak transcription	Small Intestine	intestine
3	chr11:71672200-71715200	Weak transcription	Fetal Brain Male	brain
4	chr11:71672400-71709400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr11:71672600-71709200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr11:71673600-71710800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr11:71674000-71710600	Weak transcription	Brain Germinal Matrix	brain
8	chr11:71677000-71709400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr11:71677200-71736600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr11:71678000-71710600	Weak transcription	HMEC	breast
11	chr11:71681200-71709400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr11:71684200-71709000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr11:71689000-71711800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr11:71695200-71709400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr11:71695200-71709400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr11:71695200-71710600	Weak transcription	Esophagus	oesophagus
17	chr11:71695400-71709800	Weak transcription	Dnd41	blood
18	chr11:71695400-71712200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr11:71695400-71713000	Weak transcription	Psoas Muscle	Psoas
20	chr11:71699400-71710200	Weak transcription	NHDF-Ad	bronchial
21	chr11:71699600-71710000	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr11:71699600-71710000	Weak transcription	NHLF	lung
23	chr11:71699600-71712400	Weak transcription	Aorta	Aorta
24	chr11:71699800-71709200	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr11:71701200-71709200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr11:71702000-71710200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr11:71702200-71709200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr11:71702200-71709600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr11:71702200-71709800	Weak transcription	Rectal Smooth Muscle	rectum
30	chr11:71702200-71710000	Weak transcription	Pancreas	Pancrea
31	chr11:71702200-71710200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr11:71702200-71710200	Weak transcription	Colon Smooth Muscle	Colon
33	chr11:71702200-71712600	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr11:71702200-71713000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr11:71702200-71713400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr11:71702200-71713800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr11:71702400-71709400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr11:71702400-71710000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr11:71702400-71713000	Weak transcription	Fetal Kidney	kidney
40	chr11:71702600-71709200	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr11:71702800-71709400	Weak transcription	Adipose Nuclei	Adipose
42	chr11:71702800-71710000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr11:71702800-71710000	Weak transcription	Colonic Mucosa	Colon
44	chr11:71702800-71710000	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr11:71702800-71711000	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr11:71703000-71710200	Weak transcription	HSMM	muscle
47	chr11:71703000-71710800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr11:71703000-71712800	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr11:71703200-71709400	Weak transcription	Primary hematopoietic stem cells	blood
50	chr11:71703200-71710000	Weak transcription	Liver	Liver

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