Variant report

Variant	rs5743664
Chromosome Location	chr11:71711088-71711089
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:71703508..71707371-chr11:71709245..71711101,3	K562	blood:
2	chr11:71709478..71712665-chr11:71718866..71721839,3	K562	blood:
3	chr11:71707937..71711570-chr11:71790035..71793811,3	K562	blood:

Variant related genes	Relation type
ENSG00000137497	Chromatin interaction
ENSG00000137522	Chromatin interaction
ENSG00000184154	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1062452	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28395796	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35501875	0.85[AFR][1000 genomes]
rs3763797	0.85[AFR][1000 genomes]
rs5743655	1.00[ASN][1000 genomes]
rs5743662	1.00[ASN][1000 genomes]
rs5743669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5743670	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5743675	1.00[EUR][1000 genomes]
rs5743676	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5743678	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61749192	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs951586	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
2	nsv428262	chr11:71363639-71804055	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71672200-71715200	Weak transcription	Fetal Brain Male	brain
2	chr11:71677200-71736600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:71689000-71711800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:71695400-71712200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr11:71695400-71713000	Weak transcription	Psoas Muscle	Psoas
6	chr11:71699600-71712400	Weak transcription	Aorta	Aorta
7	chr11:71702200-71712600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr11:71702200-71713000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr11:71702200-71713400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr11:71702200-71713800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:71702400-71713000	Weak transcription	Fetal Kidney	kidney
12	chr11:71703000-71712800	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr11:71705400-71734400	Strong transcription	Fetal Intestine Small	intestine
14	chr11:71705800-71711800	Strong transcription	HepG2	liver
15	chr11:71706000-71712000	Weak transcription	NHEK	skin
16	chr11:71706400-71717200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr11:71706600-71713000	Weak transcription	NH-A	brain
18	chr11:71706600-71714600	Genic enhancers	Fetal Muscle Leg	muscle
19	chr11:71706600-71718000	Genic enhancers	Fetal Muscle Trunk	muscle
20	chr11:71707600-71711600	Weak transcription	Fetal Lung	lung
21	chr11:71707600-71711600	Genic enhancers	K562	blood
22	chr11:71707600-71713200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr11:71707800-71712800	Weak transcription	Ovary	ovary
24	chr11:71708200-71712400	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr11:71709000-71712200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr11:71709400-71711200	Enhancers	Stomach Mucosa	stomach
27	chr11:71709400-71723800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr11:71709600-71711200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
29	chr11:71709600-71711200	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
30	chr11:71709600-71711800	Enhancers	Small Intestine	intestine
31	chr11:71709600-71722400	Strong transcription	Fetal Brain Female	brain
32	chr11:71709600-71737000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr11:71709800-71711400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
34	chr11:71709800-71714600	Weak transcription	Hela-S3	cervix
35	chr11:71709800-71717200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr11:71709800-71735800	Strong transcription	Cortex derived primary cultured neurospheres	brain
37	chr11:71709800-71736600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr11:71709800-71748000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr11:71710000-71711200	Enhancers	Sigmoid Colon	Sigmoid Colon
40	chr11:71710000-71714000	Genic enhancers	Fetal Stomach	stomach
41	chr11:71710200-71711200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr11:71710200-71711600	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
43	chr11:71710200-71735600	Strong transcription	iPS-15b Cell Line	embryonic stem cell
44	chr11:71710400-71711200	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr11:71710400-71711400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
46	chr11:71710400-71711600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
47	chr11:71710400-71713800	Weak transcription	Primary hematopoietic stem cells	blood
48	chr11:71710400-71716000	Strong transcription	A549	lung
49	chr11:71710600-71711200	Enhancers	Fetal Heart	heart
50	chr11:71710600-71711200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum

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