Variant report

Variant	rs57439653
Chromosome Location	chr14:68833606-68833607
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68655604..68658456-chr14:68831451..68833713,2	MCF-7	breast:
2	chr14:68832613..68834269-chr14:69259859..69261484,2	MCF-7	breast:
3	chr14:68833173..68835923-chr14:68849243..68851394,2	MCF-7	breast:
4	chr14:68830049..68833032-chr14:68833353..68836919,3	MCF-7	breast:
5	chr14:68833551..68835141-chr14:68843707..68845855,2	K562	blood:
6	chr14:68829901..68834300-chr14:68923345..68927378,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs61002646	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv564962	chr14:68795209-68837882	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68826200-68835400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr14:68827200-68834200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr14:68827200-68834400	Weak transcription	Small Intestine	intestine
4	chr14:68827200-68834800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr14:68827400-68835000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr14:68828200-68835000	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr14:68829600-68835400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr14:68829600-68837400	Enhancers	Primary hematopoietic stem cells	blood
9	chr14:68829600-68837400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr14:68829800-68837400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr14:68830000-68835200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr14:68830200-68833800	Enhancers	A549	lung
13	chr14:68830200-68834400	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr14:68830200-68836200	Enhancers	Fetal Lung	lung
15	chr14:68830600-68836800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr14:68830800-68835200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr14:68831000-68835800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr14:68831200-68833800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr14:68831200-68833800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr14:68831200-68834600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr14:68831400-68835000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr14:68831600-68836600	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr14:68831800-68833800	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr14:68831800-68834200	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr14:68831800-68838400	Weak transcription	Fetal Muscle Trunk	muscle
26	chr14:68831800-68841600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr14:68831800-68844200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr14:68832000-68834200	Weak transcription	Fetal Thymus	thymus
29	chr14:68832000-68834200	Weak transcription	HSMM	muscle
30	chr14:68832000-68834400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr14:68832000-68834400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr14:68832000-68835200	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr14:68832000-68835600	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr14:68832000-68836200	Weak transcription	Brain Cingulate Gyrus	brain
35	chr14:68832000-68836600	Weak transcription	HSMMtube	muscle
36	chr14:68832000-68843200	Weak transcription	Placenta	Placenta
37	chr14:68832000-68843800	Weak transcription	Ovary	ovary
38	chr14:68832000-68844200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr14:68832000-68851600	Weak transcription	Lung	lung
40	chr14:68832200-68834200	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr14:68832200-68834200	Weak transcription	NH-A	brain
42	chr14:68832200-68834400	Weak transcription	Osteobl	bone
43	chr14:68832200-68835000	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr14:68832200-68836000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr14:68832200-68836400	Weak transcription	Stomach Mucosa	stomach
46	chr14:68832200-68836600	Weak transcription	Fetal Intestine Large	intestine
47	chr14:68832200-68836600	Weak transcription	Fetal Intestine Small	intestine
48	chr14:68832200-68837000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr14:68832200-68838600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr14:68832200-68841600	Weak transcription	Pancreas	Pancrea

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