Variant report

Variant	rs574404290
Chromosome Location	chr6:33718177-33718178
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:33717632..33719728-chr6:33734198..33737184,2	K562	blood:
2	chr6:33713896..33715870-chr6:33717475..33719203,2	K562	blood:
3	chr6:33717351..33720634-chr6:33722895..33725009,3	K562	blood:
4	chr6:33716774..33719604-chr6:33722894..33724395,2	K562	blood:
5	chr6:33692582..33695228-chr6:33717074..33719027,2	K562	blood:
6	chr6:33716798..33718334-chr6:33744773..33747721,2	K562	blood:
7	chr6:33717026..33719225-chr6:33737928..33740540,2	MCF-7	breast:
8	chr6:33717001..33719930-chr6:33756204..33758503,2	MCF-7	breast:
9	chr6:33711960..33715900-chr6:33717224..33721956,7	MCF-7	breast:
10	chr6:33717929..33721430-chr6:33728075..33731260,3	MCF-7	breast:
11	chr6:33714370..33717122-chr6:33717231..33718975,2	K562	blood:
12	chr6:33708535..33711845-chr6:33715070..33719242,6	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000161904	Chromatin interaction
ENSG00000161896	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885772	chr6:33638180-33767727	Bivalent Enhancer Genic enhancers Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv462897	chr6:33717770-33778964	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv602839	chr6:33717770-33778964	Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33712400-33719600	Weak transcription	Gastric	stomach
2	chr6:33714200-33718400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:33714200-33719200	Weak transcription	Pancreas	Pancrea
4	chr6:33714800-33718200	Weak transcription	Right Atrium	heart
5	chr6:33714800-33718400	Weak transcription	Esophagus	oesophagus
6	chr6:33714800-33718400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr6:33714800-33718400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr6:33714800-33718600	Weak transcription	Colonic Mucosa	Colon
9	chr6:33714800-33718800	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr6:33714800-33719200	Weak transcription	Lung	lung
11	chr6:33714800-33720600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:33714800-33721000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:33714800-33722600	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr6:33715000-33718600	Weak transcription	Spleen	Spleen
15	chr6:33715000-33718600	Weak transcription	HMEC	breast
16	chr6:33715000-33720600	Enhancers	Fetal Muscle Leg	muscle
17	chr6:33715200-33718200	Weak transcription	NHLF	lung
18	chr6:33715200-33718400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr6:33715200-33737800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr6:33715400-33718600	Weak transcription	Right Ventricle	heart
21	chr6:33715600-33718200	Weak transcription	Fetal Lung	lung
22	chr6:33715600-33718600	Weak transcription	Fetal Intestine Small	intestine
23	chr6:33715600-33719400	Weak transcription	Left Ventricle	heart
24	chr6:33715600-33719600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr6:33715600-33729400	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr6:33715800-33718200	Weak transcription	Fetal Intestine Large	intestine
27	chr6:33716000-33718200	Enhancers	HSMM	muscle
28	chr6:33716200-33720400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr6:33716400-33720600	Enhancers	Placenta	Placenta
30	chr6:33716600-33720600	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr6:33717000-33718200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr6:33717000-33718400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr6:33717000-33718400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr6:33717000-33723000	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr6:33717200-33718400	Weak transcription	Fetal Thymus	thymus
36	chr6:33717600-33718600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr6:33717600-33718600	Enhancers	Muscle Satellite Cultured Cells	--
38	chr6:33717600-33719200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
39	chr6:33717600-33720400	Enhancers	HSMMtube	muscle
40	chr6:33717800-33718200	Weak transcription	Fetal Muscle Trunk	muscle
41	chr6:33717800-33718200	Active TSS	Psoas Muscle	Psoas
42	chr6:33717800-33719600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr6:33718000-33718400	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr6:33718000-33718400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr6:33718000-33719800	Enhancers	Liver	Liver
46	chr6:33718000-33720200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr6:33718000-33720200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr6:33718000-33721000	Enhancers	Stomach Mucosa	stomach

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