Variant report

Variant	rs57441389
Chromosome Location	chr1:73567082-73567083
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs55710119	0.83[ASN][1000 genomes]
rs56355427	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs56393511	0.83[ASN][1000 genomes]
rs56681081	0.83[ASN][1000 genomes]
rs56742425	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs56996808	0.83[ASN][1000 genomes]
rs57118574	0.83[ASN][1000 genomes]
rs57345656	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs57458135	0.84[AMR][1000 genomes]
rs58252227	0.83[ASN][1000 genomes]
rs58687178	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs58759875	0.83[ASN][1000 genomes]
rs58801081	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs59112802	0.83[ASN][1000 genomes]
rs59381674	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs59583546	0.83[ASN][1000 genomes]
rs59674856	0.83[ASN][1000 genomes]
rs60262946	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs60357441	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs60453462	0.83[ASN][1000 genomes]
rs60711999	0.81[ASN][1000 genomes]
rs60715960	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs61003856	0.83[ASN][1000 genomes]
rs61022613	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs61029701	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs61071256	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs61094497	0.83[ASN][1000 genomes]
rs61229063	0.83[ASN][1000 genomes]
rs61262786	0.83[ASN][1000 genomes]
rs61464284	0.83[ASN][1000 genomes]
rs74091214	0.83[ASN][1000 genomes]
rs74091215	0.83[ASN][1000 genomes]
rs74091216	0.83[ASN][1000 genomes]
rs74091260	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs74091266	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs74091268	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs74091272	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs74091275	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs74091277	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs74091279	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs74091280	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs74091281	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs74091283	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs74091287	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs74091288	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs74091291	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs74091295	0.83[ASN][1000 genomes]
rs74091297	0.83[ASN][1000 genomes]
rs74091300	0.83[ASN][1000 genomes]
rs74091301	0.83[ASN][1000 genomes]
rs74091954	0.80[ASN][1000 genomes]
rs74092376	0.81[ASN][1000 genomes]
rs74092379	0.85[ASN][1000 genomes]
rs74092380	0.81[ASN][1000 genomes]
rs74092381	0.81[ASN][1000 genomes]
rs74092384	0.81[ASN][1000 genomes]
rs74092388	0.81[ASN][1000 genomes]
rs74092389	0.83[ASN][1000 genomes]
rs74092392	0.83[ASN][1000 genomes]
rs74092393	0.83[ASN][1000 genomes]
rs74092394	0.83[ASN][1000 genomes]
rs74092400	0.83[ASN][1000 genomes]
rs74092402	0.83[ASN][1000 genomes]
rs74092637	0.81[ASN][1000 genomes]
rs74094603	0.83[ASN][1000 genomes]
rs74094604	0.83[ASN][1000 genomes]
rs74094606	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005356	chr1:73542786-74124065	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1010267	chr1:73551169-73628431	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv870774	chr1:73560811-73706449	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv945998	chr1:73564960-73573389	Enhancers Weak transcription ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:73565600-73570600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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