Variant report

Variant	rs56681081
Chromosome Location	chr1:73571861-73571862
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 141 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:137)

rs_ID	r²[population]
rs10890001	0.96[ASN][1000 genomes]
rs10890002	0.92[ASN][1000 genomes]
rs11210090	0.86[ASN][1000 genomes]
rs11210093	0.88[ASN][1000 genomes]
rs11210116	0.96[ASN][1000 genomes]
rs17093667	0.91[ASN][1000 genomes]
rs2177839	0.82[ASN][1000 genomes]
rs2692845	0.82[ASN][1000 genomes]
rs3001406	0.86[ASN][1000 genomes]
rs4292906	0.86[ASN][1000 genomes]
rs4342807	0.88[ASN][1000 genomes]
rs4344271	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4396073	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4649970	0.86[ASN][1000 genomes]
rs55693193	0.81[ASN][1000 genomes]
rs55710119	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55711267	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55811940	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55871113	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56073791	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56118919	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56355427	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56361235	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56393511	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56742425	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56996808	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57118574	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57135981	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57345656	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57441389	0.83[ASN][1000 genomes]
rs57458135	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58252227	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58687178	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58759875	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58801081	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59074407	0.88[ASN][1000 genomes]
rs59112802	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59291669	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59381674	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59583546	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59603863	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59663011	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59674856	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60001238	0.91[ASN][1000 genomes]
rs60262946	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60357441	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60439400	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60453462	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60711999	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60715960	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60921218	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61003856	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61022613	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61027335	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61029701	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61071256	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61094497	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61229063	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61262786	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61464284	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6692856	0.86[ASN][1000 genomes]
rs74090509	0.91[ASN][1000 genomes]
rs74090513	0.91[ASN][1000 genomes]
rs74090514	0.91[ASN][1000 genomes]
rs74090526	0.91[ASN][1000 genomes]
rs74090527	0.91[ASN][1000 genomes]
rs74090532	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74090533	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74090534	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74090535	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74090538	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74090540	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74090541	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74090543	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74090546	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74090547	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74090550	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74090553	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs74090555	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74090556	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74090557	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74090559	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74091214	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74091215	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74091216	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74091260	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74091266	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74091268	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74091272	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74091275	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74091277	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74091279	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74091280	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74091281	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74091283	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74091287	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74091288	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74091291	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74091295	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74091297	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74091300	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74091301	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74091954	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs74092376	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs74092377	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74092379	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs74092380	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs74092381	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs74092384	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs74092388	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs74092389	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74092392	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74092393	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74092394	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74092400	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74092402	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74092628	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74092629	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74092630	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74092631	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74092632	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74092633	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74092634	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74092637	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs74094603	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74094604	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74094606	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7412164	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7412167	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7511969	0.96[ASN][1000 genomes]
rs7519779	0.96[ASN][1000 genomes]
rs7519879	0.96[ASN][1000 genomes]
rs7529186	0.94[ASN][1000 genomes]
rs7535137	0.86[ASN][1000 genomes]
rs7542800	0.96[ASN][1000 genomes]
rs9425114	0.86[ASN][1000 genomes]
rs9661859	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005356	chr1:73542786-74124065	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1010267	chr1:73551169-73628431	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv870774	chr1:73560811-73706449	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv945998	chr1:73564960-73573389	Enhancers Weak transcription ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:73570800-73572000	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell

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