Variant report

Variant	rs60439400
Chromosome Location	chr1:73626443-73626444
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 118 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:113)

rs_ID	r²[population]
rs10890001	0.86[ASN][1000 genomes]
rs10890002	0.82[ASN][1000 genomes]
rs11210116	0.86[ASN][1000 genomes]
rs4344271	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4396073	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55710119	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55711267	0.86[ASN][1000 genomes]
rs55811940	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55871113	0.84[ASN][1000 genomes]
rs56073791	0.86[ASN][1000 genomes]
rs56118919	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56355427	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56361235	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56393511	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56681081	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56742425	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56922723	0.90[AMR][1000 genomes]
rs56996808	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57118574	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs57135981	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57345656	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57458135	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58252227	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58687178	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58759875	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58801081	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59112802	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59291669	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59381674	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59583546	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59603863	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59612672	0.86[AMR][1000 genomes]
rs59663011	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59674856	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60262946	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60357441	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60453462	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60711999	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60715960	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60921218	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61003856	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61022613	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61027335	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61029701	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61071256	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61094497	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61229063	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61262786	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61352371	0.86[AMR][1000 genomes]
rs61464284	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs74090538	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs74090540	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs74090541	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs74090543	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs74090546	0.86[ASN][1000 genomes]
rs74090547	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs74090550	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs74090553	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs74090555	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs74090556	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs74090557	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs74090559	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs74091214	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs74091215	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs74091216	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs74091260	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs74091266	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs74091268	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs74091272	0.89[ASN][1000 genomes]
rs74091275	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs74091277	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs74091279	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs74091280	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs74091281	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs74091283	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs74091287	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs74091288	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs74091291	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs74091295	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs74091297	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs74091300	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs74091301	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs74091954	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74092376	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs74092377	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs74092379	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74092380	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs74092381	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs74092384	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs74092388	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs74092389	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs74092392	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs74092393	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs74092394	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs74092400	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs74092402	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs74092628	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs74092629	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs74092630	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs74092631	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs74092632	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs74092633	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs74092634	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs74092637	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs74094603	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs74094604	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs74094606	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7412164	0.81[ASN][1000 genomes]
rs7511969	0.86[ASN][1000 genomes]
rs7519779	0.86[ASN][1000 genomes]
rs7519879	0.86[ASN][1000 genomes]
rs7529186	0.84[ASN][1000 genomes]
rs7542800	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005356	chr1:73542786-74124065	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1010267	chr1:73551169-73628431	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv870774	chr1:73560811-73706449	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv2757736	chr1:73613099-73775684	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2758942	chr1:73613099-73775684	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:73626400-73626600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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