Variant report

Variant	rs74090509
Chromosome Location	chr1:73409879-73409880
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 138 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:137)

rs_ID	r²[population]
rs10890001	0.88[ASN][1000 genomes]
rs10890002	0.84[ASN][1000 genomes]
rs11210090	0.90[ASN][1000 genomes]
rs11210093	0.92[ASN][1000 genomes]
rs11210116	0.88[ASN][1000 genomes]
rs12041212	0.86[ASN][1000 genomes]
rs1358033	0.86[ASN][1000 genomes]
rs17093667	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2177839	0.86[ASN][1000 genomes]
rs2692845	0.86[ASN][1000 genomes]
rs2692849	0.86[ASN][1000 genomes]
rs3001406	0.90[ASN][1000 genomes]
rs4292906	0.90[ASN][1000 genomes]
rs4342807	0.92[ASN][1000 genomes]
rs4344271	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4396073	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4649970	0.90[ASN][1000 genomes]
rs55693193	0.84[ASN][1000 genomes]
rs55710119	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55711267	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55811940	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55871113	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56073791	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56118919	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56355427	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56361235	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56393511	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56681081	0.91[ASN][1000 genomes]
rs56742425	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56996808	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57118574	0.91[ASN][1000 genomes]
rs57135981	0.86[AFR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57345656	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57458135	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58252227	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58687178	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58759875	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58801081	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59074407	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59112802	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59291669	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59381674	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59583546	0.91[ASN][1000 genomes]
rs59603863	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59663011	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59674856	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60001238	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60262946	0.91[ASN][1000 genomes]
rs60357441	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60453462	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60711999	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60715960	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60921218	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61003856	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61022613	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61027335	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61029701	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61071256	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61094497	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61229063	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61262786	0.91[ASN][1000 genomes]
rs61464284	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6692856	0.90[ASN][1000 genomes]
rs74090513	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74090514	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74090526	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74090527	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74090532	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74090533	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74090534	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74090535	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74090538	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74090540	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74090541	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74090543	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74090546	0.87[AFR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74090547	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74090550	0.86[AFR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74090553	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs74090555	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74090556	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74090557	0.81[AFR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74090559	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74091214	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74091215	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74091216	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74091260	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74091266	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74091268	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74091272	0.91[ASN][1000 genomes]
rs74091275	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74091277	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74091279	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74091280	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74091281	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74091283	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74091287	0.91[ASN][1000 genomes]
rs74091288	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74091291	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74091295	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74091297	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74091300	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74091301	0.91[ASN][1000 genomes]
rs74092376	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs74092377	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs74092379	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs74092380	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs74092381	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs74092384	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs74092388	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs74092389	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74092392	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74092393	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74092394	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74092400	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74092402	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74092628	0.92[ASN][1000 genomes]
rs74092629	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74092630	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74092631	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74092632	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74092633	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74092634	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74092637	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs74094603	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74094604	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74094606	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7412164	0.86[AFR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7412167	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7511969	0.88[ASN][1000 genomes]
rs7519779	0.88[ASN][1000 genomes]
rs7519879	0.88[ASN][1000 genomes]
rs7529186	0.86[ASN][1000 genomes]
rs7535137	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7542800	0.88[ASN][1000 genomes]
rs9425114	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9661859	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012319	chr1:73337418-73547086	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:73408200-73412000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr1:73408400-73412200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:73409200-73410200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr1:73409400-73410000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr1:73409400-73410200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr1:73409400-73410200	Enhancers	H9 Cell Line	embryonic stem cell
7	chr1:73409600-73410200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr1:73409800-73410000	Enhancers	H1 Cell Line	embryonic stem cell
9	chr1:73409800-73410200	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr1:73409800-73410200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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