Variant report

Variant	rs57453069
Chromosome Location	chr10:26074083-26074084
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2437411	0.88[AFR][1000 genomes]
rs2505419	0.82[AFR][1000 genomes]
rs57781729	1.00[AMR][1000 genomes]
rs59239508	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61064543	1.00[AMR][1000 genomes]
rs7079491	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74127560	0.83[AMR][1000 genomes]
rs74127561	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74127562	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26066200-26076400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr10:26066200-26082800	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr10:26069000-26077600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:26069800-26082800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr10:26072200-26077000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr10:26073200-26076800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr10:26073400-26076400	Enhancers	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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