Variant report

Variant	rs74127562
Chromosome Location	chr10:26079978-26079979
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs57453069	0.83[AMR][1000 genomes]
rs57781729	0.83[AMR][1000 genomes]
rs59239508	0.83[AMR][1000 genomes]
rs61064543	0.83[AMR][1000 genomes]
rs7079491	0.83[AMR][1000 genomes]
rs7101029	0.83[AMR][1000 genomes]
rs74127560	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74127561	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv947599	chr10:26076303-26081220	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26066200-26082800	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr10:26069800-26082800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links