Variant report

Variant	rs57455846
Chromosome Location	chr1:63257507-63257508
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:63248914..63253778-chr1:63255996..63260750,5	K562	blood:
2	chr1:62873740..62876024-chr1:63257021..63258762,2	K562	blood:
3	chr1:63249588..63251900-chr1:63256945..63259416,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000125703	Chromatin interaction

rs_ID	r²[population]
rs10047193	0.83[AFR][1000 genomes]
rs10159254	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56006426	1.00[AMR][1000 genomes]
rs56708934	0.83[AFR][1000 genomes]
rs57256059	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57811553	1.00[AMR][1000 genomes]
rs58618719	1.00[AMR][1000 genomes]
rs58682223	1.00[AMR][1000 genomes]
rs58986719	1.00[AMR][1000 genomes]
rs59325087	1.00[AMR][1000 genomes]
rs60492584	1.00[AMR][1000 genomes]
rs74076921	1.00[AMR][1000 genomes]
rs74076930	1.00[AMR][1000 genomes]
rs74076942	1.00[AMR][1000 genomes]
rs74076986	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74076988	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74076998	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74078303	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74078338	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74078341	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74078344	0.89[AFR][1000 genomes]

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:63250600-63262400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr1:63250600-63266600	Weak transcription	Gastric	stomach
3	chr1:63250800-63319000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr1:63251000-63259600	Weak transcription	Stomach Mucosa	stomach
5	chr1:63251000-63266600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr1:63251000-63269600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:63251000-63272600	Weak transcription	Fetal Muscle Leg	muscle
8	chr1:63251000-63274800	Weak transcription	Fetal Intestine Small	intestine
9	chr1:63251000-63296000	Weak transcription	Fetal Thymus	thymus
10	chr1:63251000-63317800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr1:63251000-63327400	Weak transcription	Fetal Stomach	stomach
12	chr1:63251200-63260200	Weak transcription	Primary hematopoietic stem cells	blood
13	chr1:63251200-63327400	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr1:63251400-63259000	Weak transcription	Primary B cells from peripheral blood	blood
15	chr1:63251400-63261200	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr1:63251400-63264800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr1:63251400-63275600	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr1:63251800-63260800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr1:63251800-63273000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr1:63252000-63266600	Weak transcription	Colon Smooth Muscle	Colon
21	chr1:63252000-63269600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr1:63252000-63284400	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr1:63252200-63258400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr1:63252800-63259000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr1:63252800-63272400	Weak transcription	Primary T cells from cord blood	blood
26	chr1:63253600-63258000	Enhancers	Brain Substantia Nigra	brain
27	chr1:63255600-63258600	Enhancers	Brain Hippocampus Middle	brain
28	chr1:63256600-63257600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr1:63256600-63258600	Enhancers	Brain Cingulate Gyrus	brain
30	chr1:63256800-63257600	Enhancers	Brain Angular Gyrus	brain
31	chr1:63256800-63260200	Enhancers	Brain Inferior Temporal Lobe	brain
32	chr1:63257200-63258400	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr1:63257400-63258200	Genic enhancers	Primary B cells from cord blood	blood
34	chr1:63257400-63293400	Weak transcription	Brain Anterior Caudate	brain

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