Variant report

Variant	rs5745647
Chromosome Location	chr7:81381195-81381196
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:81380669..81382736-chr7:81445035..81447235,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs5745650	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5745705	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5745722	0.91[AFR][1000 genomes]
rs5745726	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs5745740	0.83[AFR][1000 genomes]
rs7795388	1.00[AMR][1000 genomes]
rs7805869	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019753	chr7:81322168-81681572	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv464609	chr7:81377916-81410916	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv607689	chr7:81377916-81410916	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:81350000-81385200	Weak transcription	Left Ventricle	heart
2	chr7:81367200-81398400	Weak transcription	Lung	lung
3	chr7:81367400-81397200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr7:81373400-81397400	Weak transcription	Adipose Nuclei	Adipose
5	chr7:81374600-81393000	Weak transcription	Placenta	Placenta
6	chr7:81378200-81397200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr7:81379200-81385400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr7:81379200-81396000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr7:81379400-81392200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr7:81379600-81381200	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr7:81379600-81381400	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr7:81379600-81387000	Strong transcription	NHLF	lung
13	chr7:81379600-81390400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr7:81379800-81382200	Strong transcription	Fetal Lung	lung
15	chr7:81380000-81382000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr7:81380200-81381400	Strong transcription	Primary hematopoietic stem cells	blood
17	chr7:81380600-81381400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr7:81380600-81381400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr7:81380600-81381800	Strong transcription	Osteobl	bone
20	chr7:81380600-81382400	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr7:81380600-81382400	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr7:81380600-81382400	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr7:81380600-81382600	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr7:81380800-81381600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr7:81380800-81381600	Strong transcription	Aorta	Aorta
26	chr7:81380800-81382000	Enhancers	H1 Cell Line	embryonic stem cell
27	chr7:81380800-81382000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr7:81380800-81382200	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr7:81380800-81382600	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr7:81380800-81383000	Enhancers	Primary neutrophils fromperipheralblood	blood
31	chr7:81380800-81384400	Weak transcription	Brain Anterior Caudate	brain

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