Variant report

Variant	rs5745705
Chromosome Location	chr7:81354868-81354869
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:81349174..81351248-chr7:81351389..81355444,3	MCF-7	breast:
2	chr7:81354829..81357463-chr7:81362299..81364122,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs5745647	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5745650	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5745722	1.00[AFR][1000 genomes]
rs5745726	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs5745740	0.91[AFR][1000 genomes]
rs5745749	0.87[AFR][1000 genomes]
rs5745776	0.87[AFR][1000 genomes]
rs5745780	0.87[AFR][1000 genomes]
rs5745782	0.87[AFR][1000 genomes]
rs7795388	1.00[AMR][1000 genomes]
rs7805869	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019753	chr7:81322168-81681572	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv888562	chr7:81339304-81358973	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:81329800-81380200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr7:81339400-81380800	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr7:81340400-81357000	Weak transcription	Placenta	Placenta
4	chr7:81348200-81360400	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr7:81350000-81385200	Weak transcription	Left Ventricle	heart
6	chr7:81352400-81355400	Strong transcription	Fetal Lung	lung
7	chr7:81353200-81359600	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr7:81353200-81360400	Weak transcription	Aorta	Aorta
9	chr7:81353400-81359200	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr7:81353600-81355200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr7:81353600-81355800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr7:81353600-81356000	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr7:81353800-81356400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr7:81354200-81355000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr7:81354200-81355200	Enhancers	Placenta Amnion	Placenta Amnion
16	chr7:81354200-81355200	Enhancers	Hela-S3	cervix
17	chr7:81354200-81355400	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr7:81354200-81355400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr7:81354400-81355000	Enhancers	Osteobl	bone
20	chr7:81354400-81355400	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr7:81354400-81355400	Enhancers	Fetal Stomach	stomach
22	chr7:81354400-81355600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr7:81354400-81355800	Enhancers	Muscle Satellite Cultured Cells	--
24	chr7:81354400-81355800	Enhancers	Fetal Heart	heart
25	chr7:81354400-81355800	Enhancers	NHLF	lung
26	chr7:81354600-81355000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr7:81354600-81355200	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr7:81354600-81355600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr7:81354600-81355600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr7:81354600-81355800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr7:81354600-81355800	Enhancers	NHDF-Ad	bronchial
32	chr7:81354800-81355200	Enhancers	Adipose Nuclei	Adipose
33	chr7:81354800-81355400	Flanking Active TSS	A549	lung

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