Variant report

Variant	rs5746096
Chromosome Location	chr6:160113890-160113891
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:177)
CpG islands
(count:0)
Chromatin interactive
region (count:26)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:177 , 50 per page) page: 1 2 3 4

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F4	chr6:160113395-160114881	K562	blood:	n/a	chr6:160114654-160114664 chr6:160114023-160114033 chr6:160114623-160114632
2	ZMIZ1	chr6:160113747-160115391	K562	blood:	n/a	n/a
3	TAF1	chr6:160113582-160114988	HepG2	liver:	n/a	n/a
4	MYC	chr6:160113551-160113986	A549	lung:	n/a	n/a
5	POLR2A	chr6:160113518-160114970	GM12892	blood:	n/a	n/a
6	MAZ	chr6:160113691-160114993	Hela-S3	cervix:	n/a	n/a
7	POLR2A	chr6:160113569-160114948	HEK293	kidney:	n/a	n/a
8	RFX5	chr6:160113469-160113891	Hela-S3	cervix:	n/a	n/a
9	TAF1	chr6:160113699-160113972	H1-hESC	embryonic stem cell:	n/a	n/a
10	RUNX3	chr6:160113579-160115168	GM12878	blood:	n/a	n/a
11	POLR2A	chr6:160113625-160115005	GM18951	blood:	n/a	n/a
12	POLR2A	chr6:160113438-160115505	SK-N-MC	brain:	n/a	n/a
13	POLR2A	chr6:160113867-160114938	HUVEC	blood vessel:	n/a	n/a
14	POLR2A	chr6:160113501-160115015	K562	blood:	n/a	n/a
15	HEY1	chr6:160113887-160115715	HepG2	liver:	n/a	chr6:160114023-160114038
16	SIN3AK20	chr6:160113567-160113975	SK-N-SH	brain:	n/a	n/a
17	SMARCB1	chr6:160112911-160115703	Hela-S3	cervix:	n/a	n/a
18	POLR2A	chr6:160113435-160115068	K562	blood:	n/a	n/a
19	MAX	chr6:160113539-160115542	HepG2	liver:	n/a	n/a
20	POLR2A	chr6:160113713-160114956	NB4	blood:	n/a	n/a
21	ETS1	chr6:160113598-160114797	K562	blood:	n/a	chr6:160114687-160114698
22	POLR2A	chr6:160113587-160114938	GM12878	blood:	n/a	n/a
23	POLR2A	chr6:160113883-160115525	HUVEC	blood vessel:	n/a	n/a
24	POLR2A	chr6:160113565-160114891	GM12878	blood:	n/a	n/a
25	MAX	chr6:160112897-160115010	K562	blood:	n/a	n/a
26	YY1	chr6:160113830-160114316	H1-hESC	embryonic stem cell:	n/a	chr6:160113947-160113961
27	MAX	chr6:160113433-160114942	A549	lung:	n/a	n/a
28	POLR2A	chr6:160113843-160115253	HepG2	liver:	n/a	n/a
29	CTCF	chr6:160113800-160113950	GM12869	blood:	n/a	n/a
30	TBP	chr6:160113698-160115525	K562	blood:	n/a	n/a
31	POLR2A	chr6:160113708-160114726	GM12891	blood:	n/a	n/a
32	POLR2A	chr6:160101974-160115720	MCF10A-Er-Src	breast:	n/a	n/a
33	MAX	chr6:160113425-160115031	ECC-1	luminal epithelium:	n/a	n/a
34	MAX	chr6:160113526-160115057	MCF-7	breast:	n/a	n/a
35	ETS1	chr6:160113701-160115137	K562	blood:	n/a	chr6:160114687-160114698
36	POLR2A	chr6:160097895-160115824	Hela-S3	cervix:	n/a	n/a
37	POLR2A	chr6:160113579-160114998	ECC-1	luminal epithelium:	n/a	n/a
38	BHLHE40	chr6:160113562-160115524	HepG2	liver:	n/a	chr6:160114320-160114336 chr6:160114649-160114665 chr6:160114680-160114696 chr6:160114018-160114034 chr6:160114024-160114040 chr6:160114609-160114625
39	NR2F2	chr6:160113863-160114847	MCF-7	breast:	n/a	n/a
40	YY1	chr6:160113886-160114328	GM12892	blood:	n/a	chr6:160113947-160113961
41	HA-E2F1	chr6:160113856-160114839	Hela-S3	cervix:	n/a	chr6:160114654-160114664 chr6:160114023-160114033 chr6:160114623-160114632
42	SIN3A	chr6:160113679-160114321	GM12878	blood:	n/a	n/a
43	SIN3AK20	chr6:160113351-160114914	K562	blood:	n/a	n/a
44	ZNF143	chr6:160113487-160114593	K562	blood:	n/a	chr6:160113984-160114002
45	TAF1	chr6:160113772-160114989	H1-hESC	embryonic stem cell:	n/a	n/a
46	MYC	chr6:160113347-160114979	K562	blood:	n/a	n/a
47	POLR2A	chr6:160113854-160114946	ProgFib	skin:	n/a	n/a
48	MAX	chr6:160113412-160113913	H1-hESC	embryonic stem cell:	n/a	n/a
49	JUND	chr6:160113253-160115766	SK-N-SH	brain:	n/a	chr6:160115095-160115105 chr6:160114688-160114697 chr6:160114429-160114438 chr6:160115045-160115057
50	HEY1	chr6:160113244-160115043	K562	blood:	n/a	chr6:160114023-160114038

No data

(count:26 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:160112569..160116533-chr6:160178411..160185093,17	K562	blood:
2	chr6:160112842..160115376-chr6:160389421..160392162,4	K562	blood:
3	chr6:160109393..160116278-chr6:160208428..160213435,15	MCF-7	breast:
4	chr6:160112398..160115958-chr6:160181154..160184645,14	K562	blood:
5	chr6:160112694..160116036-chr6:160134049..160138067,4	MCF-7	breast:
6	chr6:160113795..160114478-chr6:160148517..160149156,2	MCF-7	breast:
7	chr6:160107033..160110605-chr6:160113317..160116461,4	MCF-7	breast:
8	chr6:160111614..160116073-chr6:160199119..160206139,10	K562	blood:
9	chr6:160112566..160116180-chr6:160388864..160392588,3	K562	blood:
10	chr6:160109965..160117594-chr6:160208562..160214358,24	K562	blood:
11	chr6:160111487..160116391-chr6:160146710..160151187,13	MCF-7	breast:
12	chr6:160108837..160112188-chr6:160112764..160114625,5	MCF-7	breast:
13	chr6:160111368..160115716-chr6:160203932..160208164,7	K562	blood:
14	chr6:160112459..160115914-chr6:160139844..160141816,5	MCF-7	breast:
15	chr6:160113465..160115944-chr6:160146380..160149547,5	MCF-7	breast:
16	chr6:160111087..160118798-chr6:160206664..160214845,21	K562	blood:
17	chr6:160106709..160118403-chr6:160141954..160155621,64	K562	blood:
18	chr6:160113025..160114990-chr6:160181939..160185045,3	MCF-7	breast:
19	chr6:160112101..160114486-chr6:160199725..160201973,2	MCF-7	breast:
20	chr6:160110334..160118720-chr6:160142634..160154724,57	K562	blood:
21	chr6:160112645..160116629-chr6:160179743..160184207,5	MCF-7	breast:
22	chr6:160111048..160116558-chr6:160134550..160141734,11	K562	blood:
23	chr6:160111921..160120222-chr6:160131927..160141727,18	K562	blood:
24	chr6:160111457..160116867-chr6:160162395..160167300,6	K562	blood:
25	chr6:160113797..160114443-chr6:160147663..160149062,4	Hela-S3	cervix:
26	chr3:101568288..101569152-chr6:160113671..160114315,2	Hela-S3	cervix:

No data

Variant related genes	Relation type
SOD2	TF binding region
ENSG00000220305	Chromatin interaction
ENSG00000112110	Chromatin interaction
ENSG00000251988	Chromatin interaction
ENSG00000144802	Chromatin interaction
ENSG00000206910	Chromatin interaction
ENSG00000197081	Chromatin interaction
ENSG00000120438	Chromatin interaction
ENSG00000120437	Chromatin interaction
ENSG00000146457	Chromatin interaction
ENSG00000112096	Chromatin interaction
ENSG00000207392	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12194757	1.00[CHB][hapmap];1.00[LWK][hapmap]
rs4987023	1.00[CHB][hapmap]
rs5746129	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758088	chr6:160003831-160215151	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
2	esv2759483	chr6:160003831-160215151	Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
3	nsv886806	chr6:160091560-160131943	Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:160111400-160115400	Active TSS	Psoas Muscle	Psoas
2	chr6:160111800-160114800	Active TSS	Duodenum Smooth Muscle	Duodenum
3	chr6:160112000-160114200	Flanking Active TSS	Primary hematopoietic stem cells	blood
4	chr6:160112000-160115000	Active TSS	Fetal Intestine Large	intestine
5	chr6:160112200-160114000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
6	chr6:160112200-160114000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
7	chr6:160112200-160115000	Active TSS	Ovary	ovary
8	chr6:160112200-160115200	Active TSS	Lung	lung
9	chr6:160112400-160115000	Active TSS	Hela-S3	cervix
10	chr6:160112600-160114200	Flanking Active TSS	Primary B cells from cord blood	blood
11	chr6:160112600-160114800	Active TSS	iPS-15b Cell Line	embryonic stem cell
12	chr6:160112600-160114800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
13	chr6:160112600-160115000	Active TSS	Aorta	Aorta
14	chr6:160112600-160115400	Active TSS	ES-I3 Cell Line	embryonic stem cell
15	chr6:160112600-160115400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
16	chr6:160112800-160114000	Flanking Active TSS	Placenta	Placenta
17	chr6:160112800-160115000	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
18	chr6:160112800-160115000	Bivalent/Poised TSS	HepG2	liver
19	chr6:160112800-160115200	Active TSS	Sigmoid Colon	Sigmoid Colon
20	chr6:160112800-160115200	Active TSS	Small Intestine	intestine
21	chr6:160113000-160114000	Transcr. at gene 5' and 3'	Breast Myoepithelial Primary Cells	Breast
22	chr6:160113000-160114200	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr6:160113000-160115000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr6:160113000-160115000	Active TSS	HUES64 Cell Line	embryonic stem cell
25	chr6:160113200-160114800	Active TSS	NHDF-Ad	bronchial
26	chr6:160113200-160115000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr6:160113200-160115000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr6:160113200-160115000	Active TSS	H9 Cell Line	embryonic stem cell
29	chr6:160113200-160115600	Active TSS	Left Ventricle	heart
30	chr6:160113400-160114000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr6:160113400-160114000	Active TSS	Fetal Heart	heart
32	chr6:160113400-160114000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
33	chr6:160113400-160114600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr6:160113400-160114800	Active TSS	HUES48 Cell Line	embryonic stem cell
35	chr6:160113400-160114800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr6:160113400-160114800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
37	chr6:160113400-160114800	Active TSS	Placenta Amnion	Placenta Amnion
38	chr6:160113400-160115000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr6:160113400-160115000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr6:160113400-160115000	Active TSS	iPS-20b Cell Line	embryonic stem cell
41	chr6:160113400-160115000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
42	chr6:160113400-160115000	Active TSS	Brain Angular Gyrus	brain
43	chr6:160113400-160115000	Active TSS	Brain Hippocampus Middle	brain
44	chr6:160113400-160115000	Active TSS	Colonic Mucosa	Colon
45	chr6:160113400-160115000	Active TSS	Colon Smooth Muscle	Colon
46	chr6:160113400-160115000	Active TSS	Gastric	stomach
47	chr6:160113400-160115000	Active TSS	A549	lung
48	chr6:160113400-160115000	Active TSS	NHLF	lung
49	chr6:160113400-160115200	Active TSS	Right Ventricle	heart
50	chr6:160113400-160115400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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