Variant report

Variant	rs5746129
Chromosome Location	chr6:160105943-160105944
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:160105254..160106768-chr6:160206361..160208681,2	K562	blood:
2	chr6:160098111..160102348-chr6:160103380..160107158,4	K562	blood:

Variant related genes	Relation type
ENSG00000120438	Chromatin interaction
ENSG00000206910	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12194757	1.00[CHB][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap]
rs4987023	1.00[CHB][hapmap];1.00[MEX][hapmap]
rs5746096	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026518	chr6:159912363-160113542	Active TSS Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv538491	chr6:159912363-160113542	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	esv2758088	chr6:160003831-160215151	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
4	esv2759483	chr6:160003831-160215151	Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
5	nsv886806	chr6:160091560-160131943	Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:160084000-160107800	Weak transcription	Psoas Muscle	Psoas
2	chr6:160089400-160106600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr6:160091400-160107800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr6:160091600-160109400	Weak transcription	Fetal Heart	heart
5	chr6:160095800-160110000	Weak transcription	Fetal Brain Male	brain
6	chr6:160097600-160106600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr6:160098000-160107800	Strong transcription	Primary T cells fromperipheralblood	blood
8	chr6:160098200-160111000	Strong transcription	Rectal Mucosa Donor 29	rectum
9	chr6:160098200-160111400	Strong transcription	Fetal Stomach	stomach
10	chr6:160098200-160112200	Weak transcription	NH-A	brain
11	chr6:160098400-160106600	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr6:160098400-160106800	Weak transcription	A549	lung
13	chr6:160098400-160107800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr6:160098400-160109600	Weak transcription	Fetal Kidney	kidney
15	chr6:160098400-160110800	Strong transcription	Fetal Intestine Large	intestine
16	chr6:160098400-160111000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr6:160098400-160112200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:160098600-160111400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr6:160098800-160110000	Strong transcription	Fetal Intestine Small	intestine
20	chr6:160099000-160107800	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr6:160099000-160109400	Strong transcription	Skeletal Muscle Female	skeletal muscle
22	chr6:160099000-160109800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr6:160099000-160112200	Weak transcription	HMEC	breast
24	chr6:160099800-160106800	Genic enhancers	Liver	Liver
25	chr6:160100000-160107800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr6:160100400-160107400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr6:160100600-160110000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr6:160101200-160108400	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr6:160101400-160107400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr6:160101400-160108200	Weak transcription	NHEK	skin
31	chr6:160101600-160107400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr6:160101600-160110000	Strong transcription	Duodenum Mucosa	Duodenum
33	chr6:160101800-160108600	Strong transcription	Lung	lung
34	chr6:160101800-160110600	Strong transcription	Cortex derived primary cultured neurospheres	brain
35	chr6:160101800-160111400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr6:160102000-160108400	Strong transcription	Brain Anterior Caudate	brain
37	chr6:160102000-160109600	Strong transcription	HUES6 Cell Line	embryonic stem cell
38	chr6:160102000-160109600	Strong transcription	K562	blood
39	chr6:160102000-160110800	Strong transcription	Fetal Brain Female	brain
40	chr6:160102000-160110800	Strong transcription	Osteobl	bone
41	chr6:160102000-160111200	Strong transcription	Primary B cells from peripheral blood	blood
42	chr6:160102000-160112600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr6:160102200-160107400	Strong transcription	Stomach Smooth Muscle	stomach
44	chr6:160102200-160108800	Strong transcription	Brain Substantia Nigra	brain
45	chr6:160102200-160110000	Strong transcription	Rectal Mucosa Donor 31	rectum
46	chr6:160102200-160110000	Strong transcription	Sigmoid Colon	Sigmoid Colon
47	chr6:160102200-160110000	Strong transcription	Dnd41	blood
48	chr6:160102200-160110400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr6:160102200-160110400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
50	chr6:160102200-160110400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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